Lineage for d5gmkd_ (5gmk d:)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2338494Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2339718Superfamily a.118.8: TPR-like [48452] (10 families) (S)
  5. 2339986Family a.118.8.7: HAT/Suf repeat [158782] (4 proteins)
    includes Pfam PF05843
    Pfam PF02184
    this is a repeat family; one repeat unit is 2ond A:372-408 found in domain
  6. Protein Pre-mRNA splicing factor Clf1 [346028] (1 species)
  7. Species Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292] [346190] (1 PDB entry)
  8. 2339994Domain d5gmkd_: 5gmk d: [345640]
    Other proteins in same PDB: d5gmka_, d5gmkb_, d5gmkf_, d5gmkg_, d5gmkh_, d5gmki_, d5gmkn1, d5gmkn2, d5gmkv_
    protein/RNA complex; complexed with gtp, mg, zn

Details for d5gmkd_

PDB Entry: 5gmk (more details), 3.4 Å

PDB Description: cryo-em structure of the catalytic step i spliceosome (c complex) at 3.4 angstrom resolution
PDB Compounds: (d:) Pre-mRNA-splicing factor CLF1

SCOPe Domain Sequences for d5gmkd_:

Sequence, based on SEQRES records: (download)

>d5gmkd_ a.118.8.7 (d:) Pre-mRNA splicing factor Clf1 {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
dildleelreyqrrkrteyegylkrnrldmgqwiryaqfeieqhdmrrarsiferallvd
ssfiplwiryidaelkvkcinharnlmnraistlprvdklwykyliveeslnnveivrsl
ytkwcslepgvnawnsfvdfeirqknwngvreiyskyvmahpqmqtwlkwvrfenrhgnt
eftrsvyslaidtvanlqnlqiwsdmevaklvnsfahweaaqqeyerssalyqiaiekwp
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Sequence, based on observed residues (ATOM records): (download)

>d5gmkd_ a.118.8.7 (d:) Pre-mRNA splicing factor Clf1 {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
dildleelreyqrrkrteyegylkrnrldmgqwiryaqfeieqhdmrrarsiferallvd
ssfiplwiryidaelkvkcinharnlmnraistlprvdklwykyliveeslnnveivrsl
ytkwcslepgvnawnsfvdfeirqknwngvreiyskyvmahpqmqtwlkwvrfenrhgnt
eftrsvyslaidtvanlqnlqiwsdmevaklvnsfahweaaqqeyerssalyqiaiekwp
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SCOPe Domain Coordinates for d5gmkd_:

Click to download the PDB-style file with coordinates for d5gmkd_.
(The format of our PDB-style files is described here.)

Timeline for d5gmkd_: