SCOPe 2.08: Domain d5gmka_: 5gmk a:

Lineage for d5gmka_ (5gmk a:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.7: RNA-binding domain, RBD, aka RNA recognition motif (RRM) [54928] (6 families)

5. Family d.58.7.1: Canonical RBD [54929] (70 proteins)
   Pfam PF00076
   Pfam PF13893

6. Protein Spliceosomal U2 small nuclear ribonucleoprotein B' / U2B' / Msl1 protein [54934] (2 species)
   3jb9 chain k is Msl1 from fission yeast; not included because sids are not case sensitive

7. Species Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292] [346359] (1 PDB entry)

8. Domain d5gmka_: 5gmk a: [345638]
   Other proteins in same PDB: d5gmkb_, d5gmkd_, d5gmkf_, d5gmkg_, d5gmkh_, d5gmki_, d5gmkn1, d5gmkn2, d5gmkv_
   protein/RNA complex; complexed with gtp, mg, zn

Details for d5gmka_

PDB Entry: 5gmk, 3.4 Å

PDB Description: cryo-em structure of the catalytic step i spliceosome (c complex) at 3.4 angstrom resolution

PDB Compounds: (a:) U2 small nuclear ribonucleoprotein B''

SCOPe Domain Sequences for d5gmka_:

Sequence, based on SEQRES records:

>d5gmka_ d.58.7.1 (a:) Spliceosomal U2 small nuclear ribonucleoprotein B' / U2B' / Msl1 protein {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
tlyvsqlnekinmqrlrvnlfllfatfgevlkvsmnfkkqrgqafitmrtidqaslaqis
lngerffgkplkvefsksetktl

Sequence, based on observed residues (ATOM records):

>d5gmka_ d.58.7.1 (a:) Spliceosomal U2 small nuclear ribonucleoprotein B' / U2B' / Msl1 protein {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
tlyvsqlnekinmqrlrvnlfllfatfgevvsmnfkkqrgqafitmrtidqaslaqisln
gerffgkplkvefsksetktl

Timeline for d5gmka_:

• d5gmka_ first appeared in SCOPe 2.07