Lineage for d4ld0b1 (4ld0 B:1-166)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2491249Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2493668Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2494753Family c.55.3.6: RuvC resolvase [53134] (2 proteins)
    automatically mapped to Pfam PF02075
  6. 2494754Protein RuvC resolvase [53135] (2 species)
    Holliday junction-specific endonuclease
  7. 2494760Species Thermus thermophilus [TaxId:300852] [346310] (3 PDB entries)
  8. 2494765Domain d4ld0b1: 4ld0 B:1-166 [345336]
    Other proteins in same PDB: d4ld0b2
    protein/DNA complex

Details for d4ld0b1

PDB Entry: 4ld0 (more details), 3.75 Å

PDB Description: t. thermophilus ruvc in complex with holliday junction substrate
PDB Compounds: (B:) Crossover junction endodeoxyribonuclease RuvC

SCOPe Domain Sequences for d4ld0b1:

Sequence, based on SEQRES records: (download)

>d4ld0b1 c.55.3.6 (B:1-166) RuvC resolvase {Thermus thermophilus [TaxId: 300852]}
mvvagidpgithlglgvvavegkgalkarllhgevvktspqepakervgriharvlevlh
rfrpeavavqeqffyrqnelaykvgwalgavlvaafeagvpvyaygpmqvkqalaghgha
akeevalmvrgilglkeaprpshladalaialthafyarmgtakpl

Sequence, based on observed residues (ATOM records): (download)

>d4ld0b1 c.55.3.6 (B:1-166) RuvC resolvase {Thermus thermophilus [TaxId: 300852]}
mvvagidpgithlglgvvavlkarllhgevvktspqepakervgriharvlevlhrfrpe
avavqeqffyrqnelaykvgwalgavlvaafeagvpvyaygpmqvkqalaakeevalmvr
gilglkeaprpshladalaialthafyarmgtakpl

SCOPe Domain Coordinates for d4ld0b1:

Click to download the PDB-style file with coordinates for d4ld0b1.
(The format of our PDB-style files is described here.)

Timeline for d4ld0b1:

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Domains from same chain:
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d4ld0b2
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Domains from other chains:
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d4ld0a_