SCOPe 2.08: Domain d4f3mb_: 4f3m B:

Lineage for d4f3mb_ (4f3m B:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.53: Ferredoxin-like domains from CRISPR-associated proteins [117987] (8 families)

5. Family d.58.53.2: CRISPR-associated protein Cas5d-like [345973] (2 proteins)
   Pfam PF09704. Contains several beta-sheet insertions to the common fold

6. Protein CRISPR-associated protein Cas5d [346097] (2 species)

7. Species Bacillus halodurans [TaxId:272558] [346363] (1 PDB entry)

8. Domain d4f3mb_: 4f3m B: [345246]
   complexed with edo, so4

Details for d4f3mb_

PDB Entry: 4f3m, 1.71 Å

PDB Description: crystal structure of crispr-associated protein

PDB Compounds: (B:) BH0337 protein

SCOPe Domain Sequences for d4f3mb_:

Sequence, based on SEQRES records:

>d4f3mb_ d.58.53.2 (B:) CRISPR-associated protein Cas5d {Bacillus halodurans [TaxId: 272558]}
mrnevqfelfgdyalftdpltkiggeklsysvptyqalkgiaesiywkptivfvidelrv
mkpiqmeskgvrpieygggntlahytylkdvhyqvkahfefnlhrpdlafdrnegkhysi
lqrslkaggrrdiflgarecqgyvapcefgsgdgfydgqgkyhlgtmvhgfnypdetgqh
qldvrlwsavmengyiqfprpedcpivrpvkemepkifnpdnvqsaeqllhdlg

Sequence, based on observed residues (ATOM records):

>d4f3mb_ d.58.53.2 (B:) CRISPR-associated protein Cas5d {Bacillus halodurans [TaxId: 272558]}
mrnevqfelfgdyalftdpltkiggeklsysvptyqalkgiaesiywkptivfvidelrv
mkpiqmeskgvrpilahytylkdvhyqvkahfefnlhrpdlafdrnegkhysilqrslka
ggrrdiflgarecqgyvapcefgsgdgfydgqgkyhlgtmvhgfnyhqldvrlwsavmen
gyiqfprpedcpivrpvkepkifnvqsaeqllhdlg

Timeline for d4f3mb_:

• d4f3mb_ first appeared in SCOPe 2.07