Lineage for d4cr2p1 (4cr2 P:28-325)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2332674Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2333768Superfamily a.118.8: TPR-like [48452] (10 families) (S)
  5. 2334044Family a.118.8.9: TPR-like repeats from PCI (proteasome / COP9 signalosome / eIF3) domains [345951] (10 proteins)
    N-terminal part of Pfam PF06272
    Described in PubMed 15180986 as 'HAM (HEAT analagous motif) domain'
    Probably homologous to TPR rather than HEAT, based on PubMed 15790418
  6. 2334063Protein Proteasome regulatory subunit Rpn5, N-terminal domain [346035] (1 species)
  7. 2334064Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346197] (1 PDB entry)
  8. 2334065Domain d4cr2p1: 4cr2 P:28-325 [345189]
    Other proteins in same PDB: d4cr21_, d4cr22_, d4cr23_, d4cr24_, d4cr25_, d4cr26_, d4cr27_, d4cr2a_, d4cr2b_, d4cr2c_, d4cr2d_, d4cr2e_, d4cr2f_, d4cr2g_, d4cr2h1, d4cr2h2, d4cr2h3, d4cr2i1, d4cr2i2, d4cr2i3, d4cr2j1, d4cr2j2, d4cr2j3, d4cr2k1, d4cr2k2, d4cr2k3, d4cr2l1, d4cr2l2, d4cr2l3, d4cr2m1, d4cr2m2, d4cr2m3, d4cr2n1, d4cr2n2, d4cr2n3, d4cr2o1, d4cr2o2, d4cr2p2, d4cr2q1, d4cr2q2, d4cr2r1, d4cr2r2, d4cr2s1, d4cr2s2, d4cr2t1, d4cr2t2, d4cr2u1, d4cr2u2, d4cr2v1, d4cr2v2, d4cr2w_, d4cr2x_, d4cr2y_, d4cr2z1, d4cr2z2, d4cr2z3

Details for d4cr2p1

PDB Entry: 4cr2 (more details), 7.7 Å

PDB Description: deep classification of a large cryo-em dataset defines the conformational landscape of the 26s proteasome
PDB Compounds: (P:) 26s proteasome regulatory subunit rpn5

SCOPe Domain Sequences for d4cr2p1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4cr2p1 a.118.8.9 (P:28-325) Proteasome regulatory subunit Rpn5, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
aqndcnsaldqllvlekktrqasdlasskevlakivdllasrnkwddlneqltllskkhg
qlklsiqymiqkvmeylkssksldlntrisvietirvvtenkifveverarvtkdlveik
keegkideaadilcelqvetygsmemsekiqfileqmelsilkgdysqatvlsrkilkkt
fknpkyeslkleyynllvkislhkreylevaqylqeiyqtdaiksdeakwkpvlshivyf
lvlspygnlqndlihkiqndnnlkklesqeslvklfttnelmrwpivqktyepvlned

SCOPe Domain Coordinates for d4cr2p1:

Click to download the PDB-style file with coordinates for d4cr2p1.
(The format of our PDB-style files is described here.)

Timeline for d4cr2p1:

  • d4cr2p1 is new in SCOPe 2.07-stable

View in 3D
Domains from same chain:
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d4cr2p2
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Domains from other chains:
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d4cr21_, d4cr22_, d4cr23_, d4cr24_, d4cr25_, d4cr26_, d4cr27_, d4cr2a_, d4cr2b_, d4cr2c_, d4cr2d_, d4cr2e_, d4cr2f_, d4cr2g_, d4cr2h1, d4cr2h2, d4cr2h3, d4cr2i1, d4cr2i2, d4cr2i3, d4cr2j1, d4cr2j2, d4cr2j3, d4cr2k1, d4cr2k2, d4cr2k3, d4cr2l1, d4cr2l2, d4cr2l3, d4cr2m1, d4cr2m2, d4cr2m3, d4cr2n1, d4cr2n2, d4cr2n3, d4cr2o1, d4cr2o2, d4cr2q1, d4cr2q2, d4cr2r1, d4cr2r2, d4cr2s1, d4cr2s2, d4cr2t1, d4cr2t2, d4cr2u1, d4cr2u2, d4cr2v1, d4cr2v2, d4cr2w_, d4cr2x_, d4cr2y_, d4cr2z1, d4cr2z2, d4cr2z3