Lineage for d3jb9y1 (3jb9 Y:49-171)

  1. Root: SCOPe 2.07
  2. 2581248Class g: Small proteins [56992] (98 folds)
  3. 2589401Fold g.66: CCCH zinc finger [90228] (1 superfamily)
    metal(zinc)-bound alpha+beta fold
  4. 2589402Superfamily g.66.1: CCCH zinc finger [90229] (2 families) (S)
  5. 2589418Family g.66.1.2: Pre-mRNA splicing factor Cwc2 / Cwf2 / Prp3, zinc finger domain [345986] (1 protein)
    Pfam PF16131; Zinc finger is surrounded by additional short helices and loops
  6. 2589419Protein Pre-mRNA splicing factor Cwc2 / Cwf2 / Prp3, zinc finger domain [346127] (2 species)
  7. 2589425Species Schizosaccharomyces pombe 972h- [TaxId:284812] [346438] (1 PDB entry)
  8. 2589426Domain d3jb9y1: 3jb9 Y:49-171 [344827]
    Other proteins in same PDB: d3jb9a1, d3jb9a2, d3jb9a3, d3jb9a4, d3jb9a5, d3jb9b1, d3jb9b2, d3jb9b3, d3jb9b4, d3jb9b5, d3jb9c_, d3jb9e_, d3jb9f_, d3jb9g_, d3jb9h_, d3jb9i_, d3jb9j_, d3jb9k_, d3jb9l_, d3jb9m_, d3jb9r_, d3jb9s1, d3jb9s2, d3jb9t1, d3jb9t2, d3jb9u1, d3jb9u2, d3jb9u3, d3jb9v1, d3jb9v2, d3jb9w_, d3jb9x1, d3jb9x2, d3jb9x3, d3jb9x4, d3jb9y2, d3jb9z_
    protein/RNA complex; complexed with adp, gdp, mg, zn

Details for d3jb9y1

PDB Entry: 3jb9 (more details), 3.6 Å

PDB Description: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
PDB Compounds: (Y:) Pre-mRNA-splicing factor cwf2

SCOPe Domain Sequences for d3jb9y1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3jb9y1 g.66.1.2 (Y:49-171) Pre-mRNA splicing factor Cwc2 / Cwf2 / Prp3, zinc finger domain {Schizosaccharomyces pombe 972h- [TaxId: 284812]}
parkqietrpeyemepeqpgqvynlwynkwsggmrqdplksqvksetrcvisrdsgytka
dknpgsffclyfargmcsegskceylhrlpkdtdffnanvdcfgrekhadyrddmggvgs
flr

SCOPe Domain Coordinates for d3jb9y1:

Click to download the PDB-style file with coordinates for d3jb9y1.
(The format of our PDB-style files is described here.)

Timeline for d3jb9y1:

  • d3jb9y1 is new in SCOPe 2.07-stable

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Domains from same chain:
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d3jb9y2