Lineage for d3jb9a2 (3jb9 A:1605-1780)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2882263Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
  4. 2882264Superfamily c.52.1: Restriction endonuclease-like [52980] (37 families) (S)
  5. 2882906Family c.52.1.36: Splicing factor Prp8 endonuclease-like domain [345968] (1 protein)
    Pfam PF10596
    Likely homology to endonuclease domains discussed in PubMed 21441348, PubMed 23354046
  6. 2882907Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 [346085] (2 species)
  7. 2882910Species Schizosaccharomyces pombe 972h- [TaxId:284812] [346308] (1 PDB entry)
  8. 2882911Domain d3jb9a2: 3jb9 A:1605-1780 [344793]
    Other proteins in same PDB: d3jb9a1, d3jb9a3, d3jb9a4, d3jb9a5, d3jb9b1, d3jb9b2, d3jb9b3, d3jb9b4, d3jb9b5, d3jb9c_, d3jb9e_, d3jb9f_, d3jb9g_, d3jb9h_, d3jb9i_, d3jb9j_, d3jb9k_, d3jb9l_, d3jb9m_, d3jb9r_, d3jb9s1, d3jb9s2, d3jb9t1, d3jb9t2, d3jb9u1, d3jb9u2, d3jb9u3, d3jb9v1, d3jb9v2, d3jb9w_, d3jb9x1, d3jb9x2, d3jb9x3, d3jb9x4, d3jb9y1, d3jb9y2, d3jb9z_
    protein/RNA complex; complexed with adp, gdp, mg, zn

Details for d3jb9a2

PDB Entry: 3jb9 (more details), 3.6 Å

PDB Description: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
PDB Compounds: (A:) Pre-mRNA-splicing factor spp42

SCOPe Domain Sequences for d3jb9a2:

Sequence; same for both SEQRES and ATOM records: (download)

>d3jb9a2 c.52.1.36 (A:1605-1780) Pre-mRNA splicing factor 8, Prp8 / Spp42 {Schizosaccharomyces pombe 972h- [TaxId: 284812]}

SCOPe Domain Coordinates for d3jb9a2:

Click to download the PDB-style file with coordinates for d3jb9a2.
(The format of our PDB-style files is described here.)

Timeline for d3jb9a2: