SCOPe 2.07: Domain d1rv2d4: 1rv2 D:376-896

Lineage for d1rv2d4 (1rv2 D:376-896)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)

8. Domain d1rv2d4: 1rv2 D:376-896 [344513]
   Other proteins in same PDB: d1rv2d3
   automated match to d1ig9a2
   protein/DNA complex

Details for d1rv2d4

PDB Entry: 1rv2, 2.8 Å

PDB Description: Crystal structure of RB69 gp43 in complex with DNA containing an abasic site analog

PDB Compounds: (D:) DNA polymerase

SCOPe Domain Sequences for d1rv2d4:

Sequence, based on SEQRES records:

>d1rv2d4 e.8.1.1 (D:376-896) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkas

Sequence, based on observed residues (ATOM records):

>d1rv2d4 e.8.1.1 (D:376-896) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikeaslnemlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittf
gqmalqwierkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvd
fldkfarermepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkrya
lnvwdmegtryaepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefek
efrqlnyisiasvssanniakydvggfpgpkcpfhirgiltynraipqvvegekvyvlpl
regnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekka
s

Timeline for d1rv2d4:

• d1rv2d4 is new in SCOPe 2.07-stable
  
• d1rv2d4 appears in the current release, SCOPe 2.08