SCOPe 2.08: Domain d5xnlb_: 5xnl b:

Lineage for d5xnlb_ (5xnl b:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.55: Photosystem II antenna protein-like [161076] (1 superfamily)
   6 transmembrane helices arranged in three antiparallel pairs (hairpins), segregated by cofactors; there can be insertions of different small subdomains in different exposed loops

4. Superfamily f.55.1: Photosystem II antenna protein-like [161077] (1 family)
   automatically mapped to Pfam PF00421

5. Family f.55.1.1: Photosystem II antenna protein-like [161078] (3 proteins)
   Pfam PF00421

6. Protein automated matches [191285] (5 species)
   not a true protein

7. Species Pea (Pisum sativum) [TaxId:3888] [339421] (1 PDB entry)

8. Domain d5xnlb_: 5xnl b: [344460]
   Other proteins in same PDB: d5xnl1_, d5xnl2_, d5xnl3_, d5xnl5_, d5xnl6_, d5xnl7_, d5xnla_, d5xnld_, d5xnle_, d5xnlf_, d5xnlg_, d5xnlh_, d5xnlk_, d5xnlm_, d5xnln_, d5xnlo_, d5xnlp_, d5xnls_, d5xnly_, d5xnlz_
   automated match to d4il6b_
   complexed with bcr, bct, chl, cl, cla, dgd, fe2, hem, lhg, lmg, lut, nex, oex, pho, pl9, sqd, xat

Details for d5xnlb_

PDB Entry: 5xnl, 2.7 Å

PDB Description: structure of stacked c2s2m2-type psii-lhcii supercomplex from pisum sativum

PDB Compounds: (b:) Photosystem II CP47 reaction center protein

SCOPe Domain Sequences for d5xnlb_:

Sequence; same for both SEQRES and ATOM records:

>d5xnlb_ f.55.1.1 (b:) automated matches {Pea (Pisum sativum) [TaxId: 3888]}
glpwyrvhtvvlndpgrllsvhimhtalvagwagsmalyelavfdpsdpvldpmwrqgmf
vipfmtrlgitnswggwnitggtitnpgiwsyegvaaahivfsglcflaaiwhwlywdle
ifcdertgkpsldlpkifgihlflagvacfgfgafhvtglfgpgiwvsdpygltgrvqsv
npawgvdgfdpfvpggiashhiaagtlgilaglfhlsvrppqrlykglrmgnietvlsss
iaavffaafvvagtmwygsattpielfgptryqwdqgyfqqeiyrrvsaghvenqslsea
wskipeklafydyignnpakgglfragsmdngdgiavgwlghpifrdkegrelfvrrmpt
ffetfpvvlvdgdgivrgdvpfrraeskysveqvgvivefyggelngvtysdpatvkkya
rraqlgeifeldratlksdgvfrssprgwftfghasfallfffghiwhgartlfrdlfag
idpdldaqvefgafqklgdpttr

Timeline for d5xnlb_:

• d5xnlb_ first appeared in SCOPe 2.07