SCOPe 2.08: Domain d4yj2f2: 4yj2 F:77-378

Lineage for d4yj2f2 (4yj2 F:77-378)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families)

5. Family d.142.1.10: Tubulin tyrosine ligase (TTL) C-terminal domain-like [310626] (2 proteins)
   Pfam PF03133; PubMed 22020298

6. Protein Tubulin tyrosine ligase (TTL) C-terminal domain [310728] (3 species)

7. Species Chicken (Gallus gallus) [TaxId:9031] [311385] (176 PDB entries)

8. Domain d4yj2f2: 4yj2 F:77-378 [344131]
   Other proteins in same PDB: d4yj2a1, d4yj2a2, d4yj2b1, d4yj2b2, d4yj2c1, d4yj2c2, d4yj2d1, d4yj2d2, d4yj2e_, d4yj2f1
   complexed with 4ed, ca, gdp, gol, gtp, imd, mes, mg

Details for d4yj2f2

PDB Entry: 4yj2, 2.6 Å

PDB Description: crystal structure of tubulin bound to mi-181

PDB Compounds: (F:) Tubulin-tyrosine ligase

SCOPe Domain Sequences for d4yj2f2:

Sequence, based on SEQRES records:

>d4yj2f2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
lvkliktspelsesctwfpesyviyptnlktpvapaqngirhlinntrtderevflaayn
rrregregnvwiakssagakgegilisseaselldfideqgqvhviqkylekplllepgh
rkfdirswvlvdhlyniylyregvlrtssepynsanfqdktchltnhciqkeysknygry
eegnemffeefnqylmdalnttlensillqikhiirsclmciepaistkhlhyqsfqlfg
fdfmvdeelkvwlievngapacaqklyaelcqgivdvaissvfpladtgqktsqptsifi
kl

Sequence, based on observed residues (ATOM records):

>d4yj2f2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
lvkliktspelsesctwfpesyviytderevflaayngnvwiaksisseaselldfhviq
kylekplllepghrkfdirswvlvdhlyniylyregvlrtssepynsaeegnemffeefn
qylmdalnttlensillqikhiirsclmciepaistkhlhyqsfqlfgfdfmvdeelkvw
lievngapacaqklyaelcqgivdvaissvfplasifikl

Timeline for d4yj2f2:

• d4yj2f2 first appeared in SCOPe 2.07