SCOPe 2.08: Domain d4ocmb_: 4ocm B:

Lineage for d4ocmb_ (4ocm B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
   core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest

4. Superfamily c.97.3: JAB1/MPN domain [102712] (2 families)

5. Family c.97.3.1: JAB1/MPN domain [102713] (8 proteins)
   Pfam PF01398; Pfam PF14464; synonyms Mov34, PAD-1. PubMed 17559875 asserts homology to (c.97.1)

6. Protein automated matches [267675] (2 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [346341] (4 PDB entries)

8. Domain d4ocmb_: 4ocm B: [344008]
   Other proteins in same PDB: d4ocma_, d4ocmc1, d4ocmc2, d4ocmc3, d4ocmd_, d4ocmf1, d4ocmf2, d4ocmf3
   automated match to d5w83b_
   complexed with k, zn

Details for d4ocmb_

PDB Entry: 4ocm, 1.99 Å

PDB Description: crystal structure of the rpn8-rpn11 mpn domain heterodimer, crystal form ib

PDB Compounds: (B:) 26s proteasome regulatory subunit rpn11

SCOPe Domain Sequences for d4ocmb_:

Sequence, based on SEQRES records:

>d4ocmb_ c.97.3.1 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
tketvyissiallkmlkhgragvpmevmglmlgefvddytvnvvdvfampqsgtgvsvea
vddvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlssvdvntqksfeqlnsravavvvd
piqsvkgkvvidafrlidtgalinnleprqttsntgllnkaniqalihglnrhyyslnid
yhktaketkmlmnlh

Sequence, based on observed residues (ATOM records):

>d4ocmb_ c.97.3.1 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
tketvyissiallkmlkhgragvpmevmglmlgefvddytvnvvdvfampqsgvsveavd
dvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlssvdvntqksfeqlnsravavvvdpi
qsvkgkvvidafrlidtgllnkaniqalihglnrhyyslnidyhktaketkmlmnlh

Timeline for d4ocmb_:

• d4ocmb_ first appeared in SCOPe 2.07