Lineage for d4oclb_ (4ocl B:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2489936Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2490288Superfamily c.97.3: JAB1/MPN domain [102712] (2 families) (S)
  5. 2490289Family c.97.3.1: JAB1/MPN domain [102713] (8 proteins)
    Pfam PF01398; Pfam PF14464; synonyms Mov34, PAD-1. PubMed 17559875 asserts homology to (c.97.1)
  6. 2490344Protein automated matches [267675] (2 species)
    not a true protein
  7. 2490345Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [346341] (4 PDB entries)
  8. 2490348Domain d4oclb_: 4ocl B: [344006]
    Other proteins in same PDB: d4ocla_, d4oclc_, d4ocld_, d4oclf_
    automated match to d5w83b_
    complexed with zn

Details for d4oclb_

PDB Entry: 4ocl (more details), 2.4 Å

PDB Description: Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ia
PDB Compounds: (B:) 26s proteasome regulatory subunit rpn11

SCOPe Domain Sequences for d4oclb_:

Sequence, based on SEQRES records: (download)

>d4oclb_ c.97.3.1 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
tketvyissiallkmlkhgragvpmevmglmlgefvddytvnvvdvfampqsgtgvsvea
vddvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlssvdvntqksfeqlnsravavvvd
piqsvkgkvvidafrlidtgalinnleprqttsntgllnkaniqalihglnrhyyslnid
yhktaketkmlmnlh

Sequence, based on observed residues (ATOM records): (download)

>d4oclb_ c.97.3.1 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
tketvyissiallkmlkhgragvpmevmglmlgefvddytvnvvdvfampqsgtgvsvea
vddvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlssvdvntqksfeqlnsravavvvd
piqsvkgkvvidafrlidtgagllnkaniqalihglnrhyyslnidyhktaketkmlmnl
h

SCOPe Domain Coordinates for d4oclb_:

Click to download the PDB-style file with coordinates for d4oclb_.
(The format of our PDB-style files is described here.)

Timeline for d4oclb_:

  • d4oclb_ is new in SCOPe 2.07-stable