Lineage for d2gk1.b (2gk1 Q:200-300,R:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2829818Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2831967Family c.1.8.6: beta-N-acetylhexosaminidase catalytic domain [51550] (6 proteins)
    Glycosyl hydrolase family 20, GH20
    automatically mapped to Pfam PF00728
  6. 2831984Protein beta-hexosaminidase B [89486] (1 species)
  7. 2831985Species Human (Homo sapiens) [TaxId:9606] [89487] (6 PDB entries)
  8. 2832004Domain d2gk1.b: 2gk1 Q:200-300,R: [343668]
    Other proteins in same PDB: d2gk1.1, d2gk1.2, d2gk1.3, d2gk1.4, d2gk1.5, d2gk1.6, d2gk1.7, d2gk1.8, d2gk1i1, d2gk1j1, d2gk1k1, d2gk1l1
    automatically matched to d1o7aa1
    complexed with ngt

Details for d2gk1.b

PDB Entry: 2gk1 (more details), 3.25 Å

PDB Description: x-ray crystal structure of ngt-bound hexa
PDB Compounds: (Q:) Beta-hexosaminidase subunit beta chain B, (R:) Beta-hexosaminidase subunit beta chain A

SCOPe Domain Sequences for d2gk1.b:

Sequence; same for both SEQRES and ATOM records: (download)

>g2gk1.b c.1.8.6 (Q:200-300,R:) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]}
fshrgilidtsrhylpvkiilktldamafnkfnvlhwhivddqsfpyqsitfpelsnkgs
yslshvytpndvrmvieyarlrgirvlpefdtpghtlswgkXdsfgpinptlnttysflt
tffkeisevfpdqfihlggdevefkcwesnpkiqdfmrqkgfgtdfkklesfyiqkvldi
iatinkgsivwqevfddkaklapgtivevwkdsaypeelsrvtasgfpvilsapwyldli
sygqdwrkyykvepldfggtqkqkqlfiggeaclwgeyvdatnltprlwprasavgerlw
sskdvrdmddaydrltrhrcrmvergiaaqplyagycn

SCOPe Domain Coordinates for d2gk1.b:

Click to download the PDB-style file with coordinates for d2gk1.b.
(The format of our PDB-style files is described here.)

Timeline for d2gk1.b:

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Domains from same chain:
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d2gk1.7
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Domains from other chains:
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d2gk1.1, d2gk1.1, d2gk1.1, d2gk1.1, d2gk1.2, d2gk1.2, d2gk1.2, d2gk1.2, d2gk1.3, d2gk1.3, d2gk1.3, d2gk1.3, d2gk1.4, d2gk1.4, d2gk1.4, d2gk1.4, d2gk1.5, d2gk1.5, d2gk1.5, d2gk1.5, d2gk1.6, d2gk1.6, d2gk1.6, d2gk1.6, d2gk1.7, d2gk1.7, d2gk1.7, d2gk1.8, d2gk1.8, d2gk1.8, d2gk1.8, d2gk1.9, d2gk1.9, d2gk1.9, d2gk1.9, d2gk1.a, d2gk1.a, d2gk1.a, d2gk1.a, d2gk1.c, d2gk1.c, d2gk1.c, d2gk1.c, d2gk1i1, d2gk1i1, d2gk1j1, d2gk1j1, d2gk1k1, d2gk1k1, d2gk1l1, d2gk1l1