Lineage for d2gk1.9 (2gk1 M:200-300,N:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2416558Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2418522Family c.1.8.6: beta-N-acetylhexosaminidase catalytic domain [51550] (6 protein domains)
    Glycosyl hydrolase family 20, GH20
    automatically mapped to Pfam PF00728
  6. 2418539Protein beta-hexosaminidase B [89486] (1 species)
  7. 2418540Species Human (Homo sapiens) [TaxId:9606] [89487] (6 PDB entries)
  8. 2418557Domain d2gk1.9: 2gk1 M:200-300,N: [343666]
    Other proteins in same PDB: d2gk1.1, d2gk1.2, d2gk1.3, d2gk1.4, d2gk1.5, d2gk1.6, d2gk1.7, d2gk1.8, d2gk1i1, d2gk1j1, d2gk1k1, d2gk1l1
    automatically matched to d1o7aa1
    complexed with bma, nag, ngt

Details for d2gk1.9

PDB Entry: 2gk1 (more details), 3.25 Å

PDB Description: x-ray crystal structure of ngt-bound hexa
PDB Compounds: (M:) Beta-hexosaminidase subunit beta chain B, (N:) Beta-hexosaminidase subunit beta chain A

SCOPe Domain Sequences for d2gk1.9:

Sequence; same for both SEQRES and ATOM records: (download)

>g2gk1.9 c.1.8.6 (M:200-300,N:) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]}
fshrgilidtsrhylpvkiilktldamafnkfnvlhwhivddqsfpyqsitfpelsnkgs
yslshvytpndvrmvieyarlrgirvlpefdtpghtlswgkXdsfgpinptlnttysflt
tffkeisevfpdqfihlggdevefkcwesnpkiqdfmrqkgfgtdfkklesfyiqkvldi
iatinkgsivwqevfddkaklapgtivevwkdsaypeelsrvtasgfpvilsapwyldli
sygqdwrkyykvepldfggtqkqkqlfiggeaclwgeyvdatnltprlwprasavgerlw
sskdvrdmddaydrltrhrcrmvergiaaqplyagycn

SCOPe Domain Coordinates for d2gk1.9:

Click to download the PDB-style file with coordinates for d2gk1.9.
(The format of our PDB-style files is described here.)

Timeline for d2gk1.9:

  • d2gk1.9 is new in SCOPe 2.07-stable

View in 3D
Domains from same chain:
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d2gk1.5
View in 3D
Domains from other chains:
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d2gk1.1, d2gk1.1, d2gk1.1, d2gk1.1, d2gk1.2, d2gk1.2, d2gk1.2, d2gk1.2, d2gk1.3, d2gk1.3, d2gk1.3, d2gk1.3, d2gk1.4, d2gk1.4, d2gk1.4, d2gk1.4, d2gk1.5, d2gk1.5, d2gk1.5, d2gk1.6, d2gk1.6, d2gk1.6, d2gk1.6, d2gk1.7, d2gk1.7, d2gk1.7, d2gk1.7, d2gk1.8, d2gk1.8, d2gk1.8, d2gk1.8, d2gk1.a, d2gk1.a, d2gk1.a, d2gk1.a, d2gk1.b, d2gk1.b, d2gk1.b, d2gk1.b, d2gk1.c, d2gk1.c, d2gk1.c, d2gk1.c, d2gk1i1, d2gk1i1, d2gk1j1, d2gk1j1, d2gk1k1, d2gk1k1, d2gk1l1, d2gk1l1