Lineage for d5vqma_ (5vqm A:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2898275Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. 2898276Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. 2899251Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (4 proteins)
    contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488
  6. 2899262Protein automated matches [190532] (4 species)
    not a true protein
  7. 2899281Species Peptoclostridium difficile [TaxId:645463] [342559] (1 PDB entry)
  8. 2899282Domain d5vqma_: 5vqm A: [342560]
    Other proteins in same PDB: d5vqmc1, d5vqmc2, d5vqmd_, d5vqmh_, d5vqml1, d5vqml2
    automated match to d2bvla1

Details for d5vqma_

PDB Entry: 5vqm (more details), 2.79 Å

PDB Description: clostridium difficile tcdb-gtd bound to pa41 fab
PDB Compounds: (A:) toxin b

SCOPe Domain Sequences for d5vqma_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vqma_ c.68.1.22 (A:) automated matches {Peptoclostridium difficile [TaxId: 645463]}
slvnrkqlekmanvrfrvqedeyvaildaleeyhnmsentvvekylklkdinsltdiyid
tykksgrnkalkkfkeylvtevlelknnnltpveknlhfvwiggqindtainyinqwkdv
nsdynvnvfydsnaflintlkktivesatndtlesfrenlndprfdynkfyrkrmeiiyd
kqknfinyyktqreenpdliiddivkiylsneyskdidelnsyieeslnkvtensgndvr
nfeefkggesfklyeqelverwnlaaasdilrisalkevggvyldvdmlpgiqpdlfesi
ekpssvtvdfwemvkleaimkykeyipgytsehfdmldeevqssfesvlasksdkseifs
slgdmeasplevkiafnskgiinqglisvkdsycsnlivkqienrykilnnslnpaised
ndfntttnafidsimaeanadngrfmmelgkylrvgffpdvkttinlsgpeayaaayqdl
lmfkegsmnihlieadlrnfeisktnisqsteqemaslwsfddaraka

SCOPe Domain Coordinates for d5vqma_:

Click to download the PDB-style file with coordinates for d5vqma_.
(The format of our PDB-style files is described here.)

Timeline for d5vqma_: