Lineage for d5wgia1 (5wgi A:440-798)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2453552Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
  4. 2453553Superfamily c.42.1: Arginase/deacetylase [52768] (3 families) (S)
  5. 2453947Family c.42.1.0: automated matches [191435] (1 protein)
    not a true family
  6. 2453948Protein automated matches [190626] (11 species)
    not a true protein
  7. 2454040Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (46 PDB entries)
  8. 2454041Domain d5wgia1: 5wgi A:440-798 [342516]
    Other proteins in same PDB: d5wgia2
    automated match to d3c10c_
    complexed with cl, edo, gol, k, mg, peg, tsn, zn

Details for d5wgia1

PDB Entry: 5wgi (more details), 1.05 Å

PDB Description: ultrahigh resolution crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with tsa
PDB Compounds: (A:) Hdac6 protein

SCOPe Domain Sequences for d5wgia1:

Sequence, based on SEQRES records: (download)

>d5wgia1 c.42.1.0 (A:440-798) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
sspitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeel
alchsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtg
qvrnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngt
qhifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeym
aafhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvli
ileggynltsisesmsmctsmllgdsppsldhltplktsatvsinnvlrahapfwsslr

Sequence, based on observed residues (ATOM records): (download)

>d5wgia1 c.42.1.0 (A:440-798) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
sspitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeel
alchsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtg
qvrnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngt
qhifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeym
aafhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvli
ileggynltsisesmsmctsmllgdsppsltplktsatvsinnvlrahapfwsslr

SCOPe Domain Coordinates for d5wgia1:

Click to download the PDB-style file with coordinates for d5wgia1.
(The format of our PDB-style files is described here.)

Timeline for d5wgia1:

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Domains from same chain:
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d5wgia2