SCOPe 2.08: Domain d5wgia1: 5wgi A:440-798

Lineage for d5wgia1 (5wgi A:440-798)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
   3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

4. Superfamily c.42.1: Arginase/deacetylase [52768] (3 families)

5. Family c.42.1.0: automated matches [191435] (1 protein)
   not a true family

6. Protein automated matches [190626] (14 species)
   not a true protein

7. Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (55 PDB entries)

8. Domain d5wgia1: 5wgi A:440-798 [342516]
   Other proteins in same PDB: d5wgia2
   automated match to d3c10c_
   complexed with cl, edo, gol, k, mg, peg, tsn, zn

Details for d5wgia1

PDB Entry: 5wgi, 1.05 Å

PDB Description: ultrahigh resolution crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with tsa

PDB Compounds: (A:) Hdac6 protein

SCOPe Domain Sequences for d5wgia1:

Sequence, based on SEQRES records:

>d5wgia1 c.42.1.0 (A:440-798) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
sspitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeel
alchsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtg
qvrnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngt
qhifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeym
aafhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvli
ileggynltsisesmsmctsmllgdsppsldhltplktsatvsinnvlrahapfwsslr

Sequence, based on observed residues (ATOM records):

>d5wgia1 c.42.1.0 (A:440-798) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
sspitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeel
alchsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtg
qvrnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngt
qhifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeym
aafhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvli
ileggynltsisesmsmctsmllgdsppsltplktsatvsinnvlrahapfwsslr

Timeline for d5wgia1:

• d5wgia1 first appeared in SCOPe 2.06
  
• d5wgia1 appears in SCOPe 2.07