SCOPe 2.05: Domain d1bkya_: 1bky A:

Lineage for d1bkya_ (1bky A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (58 families)

5. Family c.66.1.25: mRNA cap methylase [88785] (3 proteins)

6. Protein Polymerase regulatory subunit VP39 [53361] (2 species)

7. Species Vaccinia virus [TaxId:10245] [53362] (17 PDB entries)

8. Domain d1bkya_: 1bky A: [34214]
   protein/RNA complex; complexed with 1mc, sah

Details for d1bkya_

PDB Entry: 1bky, 2 Å

PDB Description: vaccinia methyltransferase vp39 complexed with m1cyt and s-adenosylhomocysteine

PDB Compounds: (A:) vp39

SCOPe Domain Sequences for d1bkya_:

Sequence, based on SEQRES records:

>d1bkya_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
mdvvsldkpfmyfeeidneldyepesanevakklpyqgqlklllgelfflsklqrhgild
gatvvyigsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeey
lrsikkqlhpskiilisdvrskrggnepstadllsnyalqnvmisilnpvasslkwrcpf
pdqwikdfyiphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyyln
kivrnkvvvnfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

Sequence, based on observed residues (ATOM records):

>d1bkya_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
mdvvsldkpfmyfeeidneldyepesanevakklpyqgqlklllgelfflsklqrhgild
gatvvyigsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeey
lrsikkqlhpskiilisdvrspstadllsnyalqnvmisilnpvasslkwrcpfpdqwik
dfyiphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyylnkivrnk
vvvnfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

Timeline for d1bkya_:

• d1bkya_ first appeared (with stable ids) in SCOP 1.55, called d1bky__
  
• d1bkya_ appears in SCOPe 2.04
  
• d1bkya_ appears in SCOPe 2.06
  
• d1bkya_ appears in the current release, SCOPe 2.08