Lineage for d5y9ea_ (5y9e A:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2823225Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2823226Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 2823296Protein automated matches [191200] (13 species)
    not a true protein
  7. 2823353Species Human papillomavirus type 58 [TaxId:10598] [340764] (2 PDB entries)
  8. 2823354Domain d5y9ea_: 5y9e A: [340804]
    automated match to d1dzla_
    complexed with gol, mg

Details for d5y9ea_

PDB Entry: 5y9e (more details), 2.04 Å

PDB Description: crystal structure of hpv58 pentamer
PDB Compounds: (A:) Major capsid protein L1

SCOPe Domain Sequences for d5y9ea_:

Sequence, based on SEQRES records: (download)

>d5y9ea_ b.121.6.1 (A:) automated matches {Human papillomavirus type 58 [TaxId: 10598]}
kvvstdeyvsrtsiyyyagssrllavgnpyfsikspnnnkkvlvpkvsglqyrvfrvrlp
dpnkfgfpdtsfynpdtqrlvwacvgleigrgqplgvgvsghpylnkfddtetsnrypaq
pgsdnreclsmdykqtqlcligckpptgehwgkgvasnnnaaatdcpplelfnsiiedgd
mvdtgfgcmdfgtlqanksdvpidicnstckypdylkmasepygdslffflrreqmfvrh
ffnragklgeavpddlyikgsgntaviqssaffptpsgsivtsesqlfnkpywlqraqgh
nngicwgnqlfvtvvdttrstnmtlctevtkegtykndnfkeyvrhveeydlqfvfqlck
itltaeimtyihtmdsniledwqfgltpppsaslqdtyrfvtsqaitcqktappkekedp
lnkytfwevnlkekfsadldqfplgrkfllqsgl

Sequence, based on observed residues (ATOM records): (download)

>d5y9ea_ b.121.6.1 (A:) automated matches {Human papillomavirus type 58 [TaxId: 10598]}
kvvstdeyvsrtsiyyyagssrllavgnpyfsikspnnnkkvlvpkvsglqyrvfrvrlp
dpnkfgfpdtsfynpdtqrlvwacvgleigrgqplgvgvsghpylnkfddtetsnrypaq
pgsdnreclsmdykqtqlcligckpptgehwgkgvasatdcpplelfnsiiedgdmvdtg
fgcmdfgtlqanksdvpidicnstckypdylkmasepygdslffflrreqmfvrhffnra
gklgeavpddlyikgsgntaviqssaffptpsgsivtsesqlfnkpywlqraqghnngic
wgnqlfvtvvdttrstnmtlctevtkegtykndnfkeyvrhveeydlqfvfqlckitlta
eimtyihtmdsniledwqfedplnkytfwevnlkekfsadldqfplgrkfllqsgl

SCOPe Domain Coordinates for d5y9ea_:

Click to download the PDB-style file with coordinates for d5y9ea_.
(The format of our PDB-style files is described here.)

Timeline for d5y9ea_: