SCOPe 2.08: Domain d5kd7j1: 5kd7 J:1-99

Lineage for d5kd7j1 (5kd7 J:1-99)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 proteins)

6. Protein beta2-microglobulin [88600] (7 species)

7. Species Mouse (Mus musculus) [TaxId:10090] [88603] (222 PDB entries)
   Uniprot P01887

8. Domain d5kd7j1: 5kd7 J:1-99 [340003]
   Other proteins in same PDB: d5kd7a1, d5kd7a2, d5kd7c1, d5kd7c2, d5kd7d2, d5kd7f1, d5kd7f2, d5kd7g2, d5kd7i1, d5kd7i2, d5kd7j2
   automated match to d1kjvb_
   complexed with edo, gol

Details for d5kd7j1

PDB Entry: 5kd7, 2.35 Å

PDB Description: crystal structure of murine mhc-i h-2dd in complex with murine beta2- microglobulin and a variant of peptide (pv9) of hiv gp120 mn isolate (igpgrafyv)

PDB Compounds: (J:) Beta-2-microglobulin

SCOPe Domain Sequences for d5kd7j1:

Sequence; same for both SEQRES and ATOM records:

>d5kd7j1 b.1.1.2 (J:1-99) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm

Timeline for d5kd7j1:

• d5kd7j1 first appeared in SCOPe 2.06
  
• d5kd7j1 appears in SCOPe 2.07