Lineage for d5kd7i2 (5kd7 I:182-275)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2025133Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 proteins)
  6. 2026191Protein Class I MHC, alpha-3 domain [88604] (4 species)
  7. 2026491Species Mouse (Mus musculus) [TaxId:10090] [88606] (109 PDB entries)
    Uniprot P01901 22-299
  8. 2026630Domain d5kd7i2: 5kd7 I:182-275 [339995]
    Other proteins in same PDB: d5kd7a1, d5kd7b_, d5kd7c1, d5kd7d1, d5kd7d2, d5kd7f1, d5kd7g1, d5kd7g2, d5kd7i1, d5kd7j1, d5kd7j2
    automated match to d1qo3a1
    complexed with edo, gol

Details for d5kd7i2

PDB Entry: 5kd7 (more details), 2.35 Å

PDB Description: crystal structure of murine mhc-i h-2dd in complex with murine beta2- microglobulin and a variant of peptide (pv9) of hiv gp120 mn isolate (igpgrafyv)
PDB Compounds: (I:) H-2 class I histocompatibility antigen, D-D alpha chain

SCOPe Domain Sequences for d5kd7i2:

Sequence, based on SEQRES records: (download)

>d5kd7i2 b.1.1.2 (I:182-275) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}
tdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpagdgtf
qkwasvvvplgkeqkytchveheglpepltlrwg

Sequence, based on observed residues (ATOM records): (download)

>d5kd7i2 b.1.1.2 (I:182-275) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}
tdppkahvthhrrgdvtlrcwalgfypaditltwqlngeeltqemelvetrpagdgtfqk
wasvvvplgkeqkytchveheltlrwg

SCOPe Domain Coordinates for d5kd7i2:

Click to download the PDB-style file with coordinates for d5kd7i2.
(The format of our PDB-style files is described here.)

Timeline for d5kd7i2: