Lineage for d5o04c1 (5o04 C:6-119)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2742100Protein automated matches [190119] (24 species)
    not a true protein
  7. 2745477Species Vicugna pacos [TaxId:30538] [189756] (82 PDB entries)
  8. 2745565Domain d5o04c1: 5o04 C:6-119 [339813]
    Other proteins in same PDB: d5o04a_, d5o04b_, d5o04c2, d5o04c3, d5o04d2, d5o04e2, d5o04f2
    automated match to d4xt1c_
    complexed with edo

Details for d5o04c1

PDB Entry: 5o04 (more details), 2.3 Å

PDB Description: gii.10 vietnam 026 norovirus protruding domain in complex with nanobody nano-26 and nano-85
PDB Compounds: (C:) Nanobody (VHH) Nano-85

SCOPe Domain Sequences for d5o04c1:

Sequence, based on SEQRES records: (download)

>d5o04c1 b.1.1.1 (C:6-119) automated matches {Vicugna pacos [TaxId: 30538]}
esggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnyadsvkg
rftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvs

Sequence, based on observed residues (ATOM records): (download)

>d5o04c1 b.1.1.1 (C:6-119) automated matches {Vicugna pacos [TaxId: 30538]}
esggglvqpggslrlscaasgsifsiyamgwyrqgkqrelvasissgggtnyadsvkgrf
tisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvs

SCOPe Domain Coordinates for d5o04c1:

Click to download the PDB-style file with coordinates for d5o04c1.
(The format of our PDB-style files is described here.)

Timeline for d5o04c1: