Lineage for d5o04c1 (5o04 C:1-119)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2344609Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2344610Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2347168Protein automated matches [190119] (20 species)
    not a true protein
  7. 2348290Species Vicugna pacos [TaxId:30538] [189756] (42 PDB entries)
  8. 2348328Domain d5o04c1: 5o04 C:1-119 [339813]
    Other proteins in same PDB: d5o04c2, d5o04d2, d5o04e2, d5o04f2
    automated match to d4xt1c_
    complexed with edo

Details for d5o04c1

PDB Entry: 5o04 (more details), 2.3 Å

PDB Description: gii.10 vietnam 026 norovirus protruding domain in complex with nanobody nano-26 and nano-85
PDB Compounds: (C:) Nanobody (VHH) Nano-85

SCOPe Domain Sequences for d5o04c1:

Sequence, based on SEQRES records: (download)

>d5o04c1 b.1.1.1 (C:1-119) automated matches {Vicugna pacos [TaxId: 30538]}
qvqlqesggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnya
dsvkgrftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvs

Sequence, based on observed residues (ATOM records): (download)

>d5o04c1 b.1.1.1 (C:1-119) automated matches {Vicugna pacos [TaxId: 30538]}
qvqlqesggglvqpggslrlscaasgsifsiyamgwyrqgkqrelvasissgggtnyads
vkgrftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvs

SCOPe Domain Coordinates for d5o04c1:

Click to download the PDB-style file with coordinates for d5o04c1.
(The format of our PDB-style files is described here.)

Timeline for d5o04c1: