Lineage for Species: Sphingobium sp. [TaxId: 627192]

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families) (S)
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
  5. Family c.1.9.0: automated matches [191327] (1 protein)
    not a true family
  6. Protein automated matches [190150] (36 species)
    not a true protein
  7. Species Sphingobium sp. [TaxId:627192] [339663] (5 PDB entries)

PDB entries in Species: Sphingobium sp. [TaxId: 627192]:

  1. Domain(s) for 5vn5:
    1. Domain d5vn5a_: 5vn5 A: [339664]
      Other proteins in same PDB: d5vn5c2
      automated match to d4ofca_
      complexed with cl, zn
    2. Domain d5vn5b_: 5vn5 B: [339671]
      Other proteins in same PDB: d5vn5c2
      automated match to d4ofca_
      complexed with cl, zn
    3. Domain d5vn5c1: 5vn5 C:1-332 [339669]
      Other proteins in same PDB: d5vn5c2
      automated match to d4ofca_
      complexed with cl, zn
  2. Domain(s) for 6dwv:
    1. Domain d6dwva_: 6dwv A: [358229]
      automated match to d4ofca_
      complexed with zn
    2. Domain d6dwvb_: 6dwv B: [358236]
      automated match to d4ofca_
      complexed with zn
    3. Domain d6dwvc_: 6dwv C: [358238]
      automated match to d4ofca_
      complexed with zn
    4. Domain d6dwvd_: 6dwv D: [358242]
      automated match to d4ofca_
      complexed with zn
  3. Domain(s) for 6dxq:
    1. Domain d6dxqa_: 6dxq A: [358140]
      automated match to d4ofca_
      complexed with 7qd, zn
    2. Domain d6dxqb_: 6dxq B: [358094]
      automated match to d4ofca_
      complexed with 7qd, zn
    3. Domain d6dxqc_: 6dxq C: [357976]
      automated match to d4ofca_
      complexed with 7qd, zn
    4. Domain d6dxqd_: 6dxq D: [358027]
      automated match to d4ofca_
      complexed with 7qd, zn
  4. Domain(s) for 6dxs:
    1. Domain d6dxsa1: 6dxs A:2-341 [357974]
      Other proteins in same PDB: d6dxsa2, d6dxsb2, d6dxsc2, d6dxsd2
      automated match to d4ofca_
      complexed with hj7, zn; mutant
    2. Domain d6dxsb1: 6dxs B:2-341 [358043]
      Other proteins in same PDB: d6dxsa2, d6dxsb2, d6dxsc2, d6dxsd2
      automated match to d4ofca_
      complexed with hj7, zn; mutant
    3. Domain d6dxsc1: 6dxs C:2-341 [357986]
      Other proteins in same PDB: d6dxsa2, d6dxsb2, d6dxsc2, d6dxsd2
      automated match to d4ofca_
      complexed with hj7, zn; mutant
    4. Domain d6dxsd1: 6dxs D:2-341 [357972]
      Other proteins in same PDB: d6dxsa2, d6dxsb2, d6dxsc2, d6dxsd2
      automated match to d4ofca_
      complexed with hj7, zn; mutant
  5. Domain(s) for 6e6i:
    1. Domain d6e6ia_: 6e6i A: [363193]
      automated match to d5vn5a_
      complexed with hvs, zn
    2. Domain d6e6ib_: 6e6i B: [363359]
      automated match to d5vn5a_
      complexed with hvs, zn
    3. Domain d6e6ic_: 6e6i C: [363310]
      automated match to d5vn5a_
      complexed with hvs, zn
    4. Domain d6e6id_: 6e6i D: [363101]
      automated match to d5vn5a_
      complexed with hvs, zn
    5. Domain d6e6ie_: 6e6i E: [363189]
      automated match to d5vn5a_
      complexed with hvs, zn
    6. Domain d6e6if_: 6e6i F: [363092]
      automated match to d5vn5a_
      complexed with hvs, zn
    7. Domain d6e6ig_: 6e6i G: [363211]
      automated match to d5vn5a_
      complexed with hvs, zn
    8. Domain d6e6ih_: 6e6i H: [363086]
      automated match to d5vn5a_
      complexed with hvs, zn
    9. Domain d6e6ii_: 6e6i I: [363089]
      automated match to d5vn5a_
      complexed with hvs, zn

More info for Species Sphingobium sp. [TaxId:627192] from c.1.9.0 automated matches

Timeline for Species Sphingobium sp. [TaxId:627192] from c.1.9.0 automated matches: