Lineage for d5o4fb_ (5o4f B:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2913607Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2913608Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2915150Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2915151Protein automated matches [190039] (161 species)
    not a true protein
  7. 2915760Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (113 PDB entries)
  8. 2915900Domain d5o4fb_: 5o4f B: [339624]
    automated match to d3u92a_
    complexed with 8ve, act, cl, gol, zn

Details for d5o4fb_

PDB Entry: 5o4f (more details), 2.1 Å

PDB Description: structure of gluk3 ligand-binding domain (s1s2) in complex with the agonist lm-12b at 2.10 a resolution
PDB Compounds: (B:) Glutamate receptor ionotropic, kainate 3

SCOPe Domain Sequences for d5o4fb_:

Sequence, based on SEQRES records: (download)

>d5o4fb_ c.94.1.0 (B:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
rslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgkyga
qddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpidsa
ddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtltad
yallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedklh
imkekwwrgsgc

Sequence, based on observed residues (ATOM records): (download)

>d5o4fb_ c.94.1.0 (B:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
rslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgkyga
qddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpidsa
ddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtltad
yallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedklh
imkekwwrgc

SCOPe Domain Coordinates for d5o4fb_:

Click to download the PDB-style file with coordinates for d5o4fb_.
(The format of our PDB-style files is described here.)

Timeline for d5o4fb_: