SCOPe 2.08: Domain d5vidd1: 5vid D:863-1066

Lineage for d5vidd1 (5vid D:863-1066)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
   sandwich; 12-14 strands in 2 sheets; complex topology

4. Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (27 families)

5. Family b.29.1.6: Clostridium neurotoxins, the second last domain [49956] (3 proteins)
   automatically mapped to Pfam PF07953

6. Protein Botulinum neurotoxin [49959] (2 species)

7. Species Clostridium botulinum, serotype A [TaxId:1491] [49960] (10 PDB entries)

8. Domain d5vidd1: 5vid D:863-1066 [339348]
   Other proteins in same PDB: d5vida2, d5vidb2, d5vidc2, d5vidd2, d5vide2
   automated match to d2nm1a1

Details for d5vidd1

PDB Entry: 5vid, 2.75 Å

PDB Description: receptor binding domain of bont/b in complex with mini-protein binder bot.0671.2

PDB Compounds: (D:) botulinum neurotoxin type b

SCOPe Domain Sequences for d5vidd1:

Sequence, based on SEQRES records:

>d5vidd1 b.29.1.6 (D:863-1066) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
niilnlrykdnnlidlsgygakvevydgvelndknqfkltssanskirvtqnqniifnsv
fldfsvsfwiripkykndgiqnyihneytiincmknnsgwkisirgnriiwtlidingkt
ksvffeynirediseyinrwffvtitnnlnnakiyingklesntdikdireviangeiif
kldgdidrtqfiwmkyfsifntel

Sequence, based on observed residues (ATOM records):

>d5vidd1 b.29.1.6 (D:863-1066) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
niilnlrykdnnlidlsgygakvevydgvelndknqfkltssanskirvtqnvfldfsvs
fwiripkykndgiqnyihneytiincmknnsgwkisirgnriiwtlidingktksvffey
nirediseyinrwffvtitnnlnnakiyingklesntdikdireviangeiifkldgdid
rtqfiwmkyfsifntel

Timeline for d5vidd1:

• d5vidd1 first appeared in SCOPe 2.06
  
• d5vidd1 appears in SCOPe 2.07