SCOPe 2.07: Domain d5ohka_: 5ohk A:

Lineage for d5ohka_ (5ohk A:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.0: automated matches [191342] (1 protein)
   not a true family

6. Protein automated matches [190230] (23 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187072] (51 PDB entries)

8. Domain d5ohka_: 5ohk A: [339133]
   Other proteins in same PDB: d5ohkb_
   automated match to d2ibia1
   complexed with aye, zn

Details for d5ohka_

PDB Entry: 5ohk, 2.34 Å

PDB Description: crystal structure of usp30 in covalent complex with ubiquitin propargylamide (high resolution)

PDB Compounds: (A:) Ubiquitin carboxyl-terminal hydrolase 30,Ubiquitin carboxyl-terminal hydrolase 30,Ubiquitin carboxyl-terminal hydrolase 30

SCOPe Domain Sequences for d5ohka_:

Sequence, based on SEQRES records:

>d5ohka_ d.3.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
kglvpglvnlgntcfmnsllqglsacpafirwleeftsqysrdqkeppshqylsltllhl
lkalscqevtddevldasclldvlrmyrwqissfeeqdahelfhvitsslederdgsgsh
wksqhpfhgrltsnmvckhcehqspvrfdtfdslslsipaatwghpltldhclhhfisse
svrdvvcdnctkieakgtlngekvehqrttfvkqlklgklpqclcihlqrlswsshgtpl
krhehvqfnedlsmdeykyhsnastylfrlmavvvhhgdmhsghfvtyrrsppsarnpls
tsnqwlwvsddtvrkaslqevlsssayllfyerv

Sequence, based on observed residues (ATOM records):

>d5ohka_ d.3.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
kglvpglvnlgntcfmnsllqglsacpafirwleeftsqysrqylsltllhllkalscqe
vtddevldasclldvlrmyrwqissfeeqdahelfhvitsslederdgsgshwksqhpfh
grltsnmvckhcehqspvrfdtfdslslsipaatwghpltldhclhhfissesvrdvvcd
nctkrttfvkqlklgklpqclcihlqrlswsshgtplkrhehvqfnedlsmdeykyhsna
stylfrlmavvvhhgdmhsghfvtyrrsppssnqwlwvsddtvrkaslqevlsssayllf
yerv

Timeline for d5ohka_:

• d5ohka_ first appeared in SCOPe 2.06
  
• d5ohka_ appears in the current release, SCOPe 2.08