SCOPe 2.08: Domain d5ly9b_: 5ly9 B:

Lineage for d5ly9b_ (5ly9 B:)

1. Root: SCOPe 2.08

2. Class h: Coiled coil proteins [57942] (7 folds)

3. Fold h.4: Antiparallel coiled-coil [58086] (19 superfamilies)
   this is not a true fold; contains at least two very long antiparallel helices

4. Superfamily h.4.1: Variant surface glycoprotein (N-terminal domain) [58087] (2 families)

5. Family h.4.1.0: automated matches [339070] (1 protein)
   not a true family

6. Protein automated matches [339071] (1 species)
   not a true protein

7. Species Trypanosoma brucei [TaxId:5702] [339072] (1 PDB entry)

8. Domain d5ly9b_: 5ly9 B: [339115]
   automated match to d1vsga_
   complexed with gol, mes

Details for d5ly9b_

PDB Entry: 5ly9, 1.65 Å

PDB Description: structure of mitat 1.1

PDB Compounds: (B:) Variant surface glycoprotein MITAT 1.1

SCOPe Domain Sequences for d5ly9b_:

Sequence, based on SEQRES records:

>d5ly9b_ h.4.1.0 (B:) automated matches {Trypanosoma brucei [TaxId: 5702]}
aertglkatawkplcklttelskvsgemlnegqevisniqkikaaeykvsiylaknpetq
alqqltllrgyfarktngglesyktmglatqirsaraaaylkgsideflnlleslkggse
nkclvttnadtaatrretklddqecalsmpetkpeaatrteltqtgypnlqhggggtant
fqpttstgtckllsghstngypttsaldttakvlagymtipntqveatlanmqamgnghk
atapawheawearnreakakdlaytnetgnldtqptlkalvktlllpkdntehnaeatkl
ealfgglaadktktyldmvdaeiipagiagrtteaplgkihdtvelgdilsnyemiaaqn
vvtlkkn

Sequence, based on observed residues (ATOM records):

>d5ly9b_ h.4.1.0 (B:) automated matches {Trypanosoma brucei [TaxId: 5702]}
aertglkatawkplcklttelskvsgemlnegqevisniqkikaaeykvsiylaknpetq
alqqltllrgyfarktngglesyktmglatqirsaraaaylkgsideflnlleslkggse
nkclvttnadtaatrretklddqecalsmpetkpeaatrteltqtgypnlqhggggtant
fqpttstgtckllsghstngypttsaldttakvlagymtipntqveatlanmqamgnghk
atapawheawearnreakakdlaytnetgnldtqptlkalvktlllpkehnaeatkleal
fgglaadktktyldmvdaeiipagiagrtteaplgkihdtvelgdilsnyemiaaqnvvt
lkkn

Timeline for d5ly9b_:

• d5ly9b_ first appeared in SCOPe 2.06
  
• d5ly9b_ appears in SCOPe 2.07