SCOPe 2.08: Domain d5xfdb1: 5xfd B:2-160

Lineage for d5xfdb1 (5xfd B:2-160)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
   sandwich; 12-14 strands in 2 sheets; complex topology

4. Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (27 families)

5. Family b.29.1.0: automated matches [191363] (1 protein)
   not a true family

6. Protein automated matches [190437] (70 species)
   not a true protein

7. Species Agrocybe cylindracea [TaxId:64608] [225007] (7 PDB entries)

8. Domain d5xfdb1: 5xfd B:2-160 [338834]
   Other proteins in same PDB: d5xfda2, d5xfdb2
   automated match to d1ww7a_

Details for d5xfdb1

PDB Entry: 5xfd, 1.5 Å

PDB Description: serial femtosecond x-ray structure of agrocybe cylindracea galectin with lactose solved by se-sad using xfel (refined against 60,000 patterns)

PDB Compounds: (B:) Galactoside-binding lectin

SCOPe Domain Sequences for d5xfdb1:

Sequence, based on SEQRES records:

>d5xfdb1 b.29.1.0 (B:2-160) automated matches {Agrocybe cylindracea [TaxId: 64608]}
ttsavniynisagasvdlaapvttgdivtffssalnlsagagspnntalnllsengayll
hiafrlqenvivfnsrqpnapwlveqrvsnvanqfigsggkamvtvfdhgdkyqvvinek
tviqytkqisgttsslsynstegtsifstvveavtytgl

Sequence, based on observed residues (ATOM records):

>d5xfdb1 b.29.1.0 (B:2-160) automated matches {Agrocybe cylindracea [TaxId: 64608]}
ttsavniynisagasvdlaapvttgdivtffssalnlsnntalnllsengayllhiafrl
qenvivfnsrqpnapwlveqrvsnvanqfigsggkamvtvfdhgdkyqvvinektviqyt
kqisgttsslsynstsifstvveavtytgl

Timeline for d5xfdb1:

• d5xfdb1 first appeared in SCOPe 2.06
  
• d5xfdb1 appears in SCOPe 2.07