Lineage for d5u4pa_ (5u4p A:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2489936Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2490288Superfamily c.97.3: JAB1/MPN domain [102712] (2 families) (S)
  5. 2490289Family c.97.3.1: JAB1/MPN domain [102713] (8 proteins)
    Pfam PF01398; Pfam PF14464; synonyms Mov34, PAD-1. PubMed 17559875 asserts homology to (c.97.1)
  6. 2490321Protein Proteasome regulatory subunit Rpn8 [346089] (1 species)
  7. 2490322Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346339] (9 PDB entries)
  8. 2490333Domain d5u4pa_: 5u4p A: [338696]
    Other proteins in same PDB: d5u4pb_, d5u4pc_
    automated match to d2o95a_
    complexed with zn

Details for d5u4pa_

PDB Entry: 5u4p (more details), 2.5 Å

PDB Description: protein-protein complex between 26s proteasome regulatory subunit rpn8, rpn11, and ubiquitin s31
PDB Compounds: (A:) 26s proteasome regulatory subunit rpn8

SCOPe Domain Sequences for d5u4pa_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5u4pa_ c.97.3.1 (A:) Proteasome regulatory subunit Rpn8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
mslqhekvtiaplvllsaldhyertqtkenkrcvgvilgdansstirvtnsfalpfeede
knsdvwfldhnyienmnemckkinakekligwyhsgpklrasdlkinelfkkytqnnpll
livdvkqqgvglptdayvaieqvkddgtstektflhlpctieaeeaeeigvehllrd

SCOPe Domain Coordinates for d5u4pa_:

Click to download the PDB-style file with coordinates for d5u4pa_.
(The format of our PDB-style files is described here.)

Timeline for d5u4pa_: