Lineage for d5lpqb_ (5lpq B:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2425361Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family) (S)
  5. 2425362Family c.1.20.1: tRNA-guanine transglycosylase [51714] (2 protein domains)
  6. 2425373Protein Queosine tRNA-guanine transglycosylase [51715] (3 species)
    contains zinc-binding subdomain
  7. 2425402Species Zymomonas mobilis [TaxId:542] [51716] (117 PDB entries)
    Uniprot P28720
  8. 2425525Domain d5lpqb_: 5lpq B: [338534]
    automated match to d1q2ra_
    protein/RNA complex; complexed with 72c, zn

Details for d5lpqb_

PDB Entry: 5lpq (more details), 2.52 Å

PDB Description: trna guanine transglycosylase (tgt) in co-crystallized complex (space group p21) with 6-amino-4-(2-((3ar,4r,6r,6ar)-6-methoxy-2,2- dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)ethyl)-2-(methylamino)- 1h-imidazo[4,5-g]quinazolin-8(7h)-one
PDB Compounds: (B:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d5lpqb_:

Sequence, based on SEQRES records: (download)

>d5lpqb_ c.1.20.1 (B:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilgn
tyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshldg
srhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsrk
eqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpm
lpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsed
lkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrf
sqfaqdfraryfarns

Sequence, based on observed residues (ATOM records): (download)

>d5lpqb_ c.1.20.1 (B:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatgadiilgntyhlmlrpgaer
iaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshldgsrhmlspersie
iqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiq
qgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgv
gkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsedlkpldsechcav
cqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfaqdfraryf
arns

SCOPe Domain Coordinates for d5lpqb_:

Click to download the PDB-style file with coordinates for d5lpqb_.
(The format of our PDB-style files is described here.)

Timeline for d5lpqb_: