SCOPe 2.08: Domain d5vqqa2: 5vqq A:430-552

Lineage for d5vqqa2 (5vqq A:430-552)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.0: automated matches [191357] (1 protein)
   not a true family

6. Protein automated matches [190396] (40 species)
   not a true protein

7. Species Human immunodeficiency virus type 1 group m subtype b (isolate bh10) [TaxId:11678] [275362] (22 PDB entries)

8. Domain d5vqqa2: 5vqq A:430-552 [338372]
   Other proteins in same PDB: d5vqqa1, d5vqqa3, d5vqqb_
   automated match to d1dloa1
   complexed with 9jp, so4

Details for d5vqqa2

PDB Entry: 5vqq, 2.55 Å

PDB Description: crystal structure of hiv-1 reverse transcriptase in complex with n-(6- cyano-3-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2h)-yl)ethoxy) phenoxy)-4-methylnaphthalen-1-yl)-2-fluoro-n-methylacetamide (jlj683), a non-nucleoside inhibitor

PDB Compounds: (A:) Reverse transcriptase/ribonuclease H

SCOPe Domain Sequences for d5vqqa2:

Sequence; same for both SEQRES and ATOM records:

>d5vqqa2 c.55.3.0 (A:430-552) automated matches {Human immunodeficiency virus type 1 group m subtype b (isolate bh10) [TaxId: 11678]}
ekepivgaetfyvdgaanretklgkagyvtnkgrqkvvpltnttnqktelqaiylalqds
glevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvd
klv

Timeline for d5vqqa2:

• d5vqqa2 first appeared in SCOPe 2.06
  
• d5vqqa2 appears in SCOPe 2.07