SCOPe 2.06: Domain d5kydd_: 5kyd D:

Lineage for d5kydd_ (5kyd D:)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (11 families)

5. Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
   Pfam PF00240

6. Protein Ubiquitin [54238] (8 species)

7. Species Human (Homo sapiens) [TaxId:9606] [54239] (209 PDB entries)
   Uniprot P62988
   identical sequence in many other species

8. Domain d5kydd_: 5kyd D: [337623]
   Other proteins in same PDB: d5kyda_
   automated match to d1ogwa_
   mutant

Details for d5kydd_

PDB Entry: 5kyd, 1.62 Å

PDB Description: crystal structure of usp7 catalytic domain [v302k] mutant in complex with ubiquitin

PDB Compounds: (D:) Polyubiquitin-B

SCOPe Domain Sequences for d5kydd_:

Sequence; same for both SEQRES and ATOM records:

>d5kydd_ d.15.1.1 (D:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

Timeline for d5kydd_:

• d5kydd_ is new in SCOPe 2.06-stable
  
• d5kydd_ appears in SCOPe 2.07
  
• d5kydd_ appears in the current release, SCOPe 2.08