Lineage for d4bdpa1 (4bdp A:297-468)

  1. Root: SCOP 1.63
  2. 235644Class c: Alpha and beta proteins (a/b) [51349] (117 folds)
  3. 245987Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 246267Superfamily c.55.3: Ribonuclease H-like [53098] (7 families) (S)
    consists of one domain of this fold
  5. 246466Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (5 proteins)
  6. 246489Protein Exonuclease domain of prokaryotic DNA polymerase [53119] (3 species)
    part of Klenow fragment, KF
  7. 246490Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [53122] (4 PDB entries)
  8. 246493Domain d4bdpa1: 4bdp A:297-468 [33710]
    Other proteins in same PDB: d4bdpa2
    protein/DNA complex; complexed with mg, so4

Details for d4bdpa1

PDB Entry: 4bdp (more details), 1.8 Å

PDB Description: crystal structure of bacillus dna polymerase i fragment complexed to 11 base pairs of duplex dna after addition of two datp residues

SCOP Domain Sequences for d4bdpa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4bdpa1 c.55.3.5 (A:297-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed}
aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvraaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrn

SCOP Domain Coordinates for d4bdpa1:

Click to download the PDB-style file with coordinates for d4bdpa1.
(The format of our PDB-style files is described here.)

Timeline for d4bdpa1:

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Domains from same chain:
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d4bdpa2