Lineage for d2bdpa1 (2bdp A:297-468)

  1. Root: SCOP 1.71
  2. 570216Class c: Alpha and beta proteins (a/b) [51349] (134 folds)
  3. 586264Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 586646Superfamily c.55.3: Ribonuclease H-like [53098] (10 families) (S)
    consists of one domain of this fold
  5. 586884Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (10 proteins)
    contains Pfam 00929
  6. 586925Protein Exonuclease domain of prokaryotic DNA polymerase [53119] (3 species)
    part of Klenow fragment, KF
  7. 586926Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [53122] (32 PDB entries)
  8. 586948Domain d2bdpa1: 2bdp A:297-468 [33709]
    Other proteins in same PDB: d2bdpa2
    protein/DNA complex; complexed with mg, so4

Details for d2bdpa1

PDB Entry: 2bdp (more details), 1.8 Å

PDB Description: crystal structure of bacillus dna polymerase i fragment complexed to 9 base pairs of duplex dna

SCOP Domain Sequences for d2bdpa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2bdpa1 c.55.3.5 (A:297-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed}

SCOP Domain Coordinates for d2bdpa1:

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Timeline for d2bdpa1:

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