SCOPe 2.08: Domain d1bizb_: 1biz B:

Lineage for d1bizb_ (1biz B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)
   Pfam PF00665

6. Protein Retroviral integrase, catalytic domain [53108] (5 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (74 PDB entries)

8. Domain d1bizb_: 1biz B: [33653]
   complexed with cac

Details for d1bizb_

PDB Entry: 1biz, 1.95 Å

PDB Description: hiv-1 integrase core domain

PDB Compounds: (B:) hiv-1 integrase

SCOPe Domain Sequences for d1bizb_:

Sequence, based on SEQRES records:

>d1bizb_ c.55.3.2 (B:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
pgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdn
gsnftsttvkaacwwagikqefgipynpqsqgviesmnkelkkiigqvrdqaehlktavq
mavfihnkkrkggiggysagerivdiiatdiqtke

Sequence, based on observed residues (ATOM records):

>d1bizb_ c.55.3.2 (B:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
pgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdn
gsnftsttvkaacwwagikqefgsmnkelkkiigqvrdqaehlktavqmavfihnkkrkg
giggysagerivdiiatdiqtke

Timeline for d1bizb_:

• d1bizb_ first appeared (with stable ids) in SCOP 1.55
  
• d1bizb_ appears in SCOPe 2.07