SCOP 1.57: Domain d1c1ab2: 1c1a B:55-216

Lineage for d1c1ab2 (1c1a B:55-216)

1. Root: SCOP 1.57

2. Class c: Alpha and beta proteins (a/b) [51349] (107 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)

4. Superfamily c.55.3: Ribonuclease H-like [53098] (6 families)

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (1 protein)

6. Protein Retroviral integrase, catalytic domain [53108] (3 species)

7. Species Rous sarcoma virus (RSV, avian sarcoma virus) [53109] (21 PDB entries)

8. Domain d1c1ab2: 1c1a B:55-216 [33645]
   Other proteins in same PDB: d1c1aa1, d1c1ab1

Details for d1c1ab2

PDB Entry: 1c1a, 3.1 Å

PDB Description: crystal structure of rsv two-domain integrase

SCOP Domain Sequences for d1c1ab2:

Sequence, based on SEQRES records:

>d1c1ab2 c.55.3.2 (B:55-216) Retroviral integrase, catalytic domain {Rous sarcoma virus (RSV, avian sarcoma virus)}
lgplqiwqtdftleprmaprswlavtvdtassaivvtqhgrvtsvavqhhwataiavlgr
pkaiktdngscftskstrewlarwgiahttgipgnsqgqamveranrllkdrirvlaegd
gfmkriptskqgellakamyalnhkergentktpiqkhwrpt

Sequence, based on observed residues (ATOM records):

>d1c1ab2 c.55.3.2 (B:55-216) Retroviral integrase, catalytic domain {Rous sarcoma virus (RSV, avian sarcoma virus)}
lgplqiwqtdftleprmaprswlavtvdtassaivvtqhgrvtsvavqhhwataiavlgr
pkaiktdngscftskstrewlarwgiahttgipgnsqgqamveranrllkdrirvlaegd
gfmkriptskqgellakamyalnhkertpiqkhwrpt

Timeline for d1c1ab2:

• d1c1ab2 first appeared (with stable ids) in SCOP 1.55
  
• d1c1ab2 appears in SCOP 1.59
  
• d1c1ab2 appears in the current release, SCOPe 2.08