SCOPe 2.08: Domain d2cdpd_: 2cdp D:

Lineage for d2cdpd_ (2cdp D:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.18: Galactose-binding domain-like [49784] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll

4. Superfamily b.18.1: Galactose-binding domain-like [49785] (35 families)

5. Family b.18.1.0: automated matches [191481] (1 protein)
   not a true family

6. Protein automated matches [190770] (51 species)
   not a true protein

7. Species Saccharophagus degradans [TaxId:203122] [335921] (1 PDB entry)

8. Domain d2cdpd_: 2cdp D: [336001]
   automated match to d4crra_
   complexed with ca, cl, edo

Details for d2cdpd_

PDB Entry: 2cdp, 1.59 Å

PDB Description: structure of a cbm6 in complex with neoagarohexaose

PDB Compounds: (D:) beta-agarase 1

SCOPe Domain Sequences for d2cdpd_:

Sequence, based on SEQRES records:

>d2cdpd_ b.18.1.0 (D:) automated matches {Saccharophagus degradans [TaxId: 203122]}
asiaveaenfnavggtfsdgqaqpvsvytvngntainyvnqgdyadytiavaqagnytis
yqagsgvtggsieflvnengswasktvtavpnqgwdnfqplnggsvylsagthqvrlhga
gsnnwqwnldkftlsn

Sequence, based on observed residues (ATOM records):

>d2cdpd_ b.18.1.0 (D:) automated matches {Saccharophagus degradans [TaxId: 203122]}
asiaveaenfnavggtfpvsvytvngntainyvnqgdyadytiavaqagnytisyqagsg
vtggsieflvnengswasktvtavpnqgwdnfqplnggsvylsagthqvrlhgagsnnwq
wnldkftlsn

Timeline for d2cdpd_:

• d2cdpd_ first appeared in SCOPe 2.06
  
• d2cdpd_ appears in SCOPe 2.07