SCOPe 2.08: Domain d1bqma1: 1bqm A:430-556

Lineage for d1bqma1 (1bqm A:430-556)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.1: Ribonuclease H [53099] (5 proteins)

6. Protein HIV RNase H (Domain of reverse transcriptase) [53105] (3 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [53106] (104 PDB entries)
   Uniprot P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! Uniprot P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! Uniprot P04585 158-698 # chain A coverage; chain B is shorter: 159-595

8. Domain d1bqma1: 1bqm A:430-556 [33597]
   Other proteins in same PDB: d1bqma2, d1bqmb_
   complexed with hby

Details for d1bqma1

PDB Entry: 1bqm, 3.1 Å

PDB Description: hiv-1 rt/hby 097

PDB Compounds: (A:) reverse transcriptase

SCOPe Domain Sequences for d1bqma1:

Sequence; same for both SEQRES and ATOM records:

>d1bqma1 c.55.3.1 (A:430-556) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
ekepivgaetfyvdgaanretklgkagyvtnkgrqkvvpltnttnqktelqaiylalqds
glevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvd
klvsagi

Timeline for d1bqma1:

• d1bqma1 first appeared (with stable ids) in SCOP 1.55
  
• d1bqma1 appears in SCOPe 2.07