SCOPe 2.08: Domain d5xn5b_: 5xn5 B:

Lineage for d5xn5b_ (5xn5 B:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.0: automated matches [196408] (1 protein)
   not a true family

6. Protein automated matches [196409] (46 species)
   not a true protein

7. Species Oryza sativa [TaxId:39947] [335863] (1 PDB entry)

8. Domain d5xn5b_: 5xn5 B: [335867]
   automated match to d5e8hb_

Details for d5xn5b_

PDB Entry: 5xn5, 2 Å

PDB Description: homo-dimer crystal structure of geranylgeranyl diphosphate synthases 1 from oryza sativa

PDB Compounds: (B:) Os07g0580900 protein

SCOPe Domain Sequences for d5xn5b_:

Sequence, based on SEQRES records:

>d5xn5b_ a.128.1.0 (B:) automated matches {Oryza sativa [TaxId: 39947]}
fdfnaymgekaaavnraldasipadeppaalheamryallaggkrvrpalclaacavvgg
reawampaaaavemvhtmslvhddlpcmddddlrrgkptchvvygepiavltgdallsls
fhhmarfdsyppdidadkhparvvraigelarcigseglvagqvvdlemtgstetvpler
leyihlhktaalleasvvigailgggsdeqieslrmyarsigllfqvvddildvtkssee
lgktagkdlasdkttypkllgleksrefaekllsdareqlsgfdqetaapllhlanyiay
rqn

Sequence, based on observed residues (ATOM records):

>d5xn5b_ a.128.1.0 (B:) automated matches {Oryza sativa [TaxId: 39947]}
fdfnaymgekaaavnraldasipadeppaalheamryallaggkrvrpalclaacavvgg
reawampaaaavemvhtmslvhddlpcmddddlrrgkptchvvygepiavltgdallsls
fhhmarfdsyppdidadkhparvvraigelarcigseglvagqvvdlemtvplerleyih
lhktaalleasvvigailgggsdeqieslrmyarsigllfqvvddildvtkttypkllgl
eksrefaekllsdareqlsgfdqetaapllhlanyiayrqn

Timeline for d5xn5b_:

• d5xn5b_ first appeared in SCOPe 2.06
  
• d5xn5b_ appears in SCOPe 2.07