Lineage for d5xn5a_ (5xn5 A:)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2337561Fold a.128: Terpenoid synthases [48575] (1 superfamily)
    multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers
  4. 2337562Superfamily a.128.1: Terpenoid synthases [48576] (6 families) (S)
    duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J
  5. 2337969Family a.128.1.0: automated matches [196408] (1 protein)
    not a true family
  6. 2337970Protein automated matches [196409] (38 species)
    not a true protein
  7. 2338058Species Oryza sativa [TaxId:39947] [335863] (1 PDB entry)
  8. 2338059Domain d5xn5a_: 5xn5 A: [335864]
    automated match to d5e8hb_

Details for d5xn5a_

PDB Entry: 5xn5 (more details), 2 Å

PDB Description: homo-dimer crystal structure of geranylgeranyl diphosphate synthases 1 from oryza sativa
PDB Compounds: (A:) Os07g0580900 protein

SCOPe Domain Sequences for d5xn5a_:

Sequence, based on SEQRES records: (download)

>d5xn5a_ a.128.1.0 (A:) automated matches {Oryza sativa [TaxId: 39947]}
gfdfnaymgekaaavnraldasipadeppaalheamryallaggkrvrpalclaacavvg
greawampaaaavemvhtmslvhddlpcmddddlrrgkptchvvygepiavltgdallsl
sfhhmarfdsyppdidadkhparvvraigelarcigseglvagqvvdlemtgstetvple
rleyihlhktaalleasvvigailgggsdeqieslrmyarsigllfqvvddildvtksse
elgktagkdlasdkttypkllgleksrefaekllsdareqlsgfdqetaapllhlanyia
yrqn

Sequence, based on observed residues (ATOM records): (download)

>d5xn5a_ a.128.1.0 (A:) automated matches {Oryza sativa [TaxId: 39947]}
gfdfnaymgekaaavnraldasipadeppaalheamryallaggkrvrpalclaacavvg
greawampaaaavemvhtmslvhddlpcmddddlrrgkptchvvygepiavltgdallsl
sfhhmarfdsyppdidadkhparvvraigelarcigseglvagqvvdlemtvplerleyi
hlhktaalleasvvigailgggsdeqieslrmyarsigllfqvvddildvtkdlasdktt
ypkllgleksrefaekllsdareqlsgfdqetaapllhlanyiayrqn

SCOPe Domain Coordinates for d5xn5a_:

Click to download the PDB-style file with coordinates for d5xn5a_.
(The format of our PDB-style files is described here.)

Timeline for d5xn5a_:

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d5xn5b_