Class b: All beta proteins [48724] (177 folds) |
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) |
Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins) the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2 there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus) |
Protein automated matches [190854] (15 species) not a true protein |
Species Foot-and-mouth disease virus - type o [TaxId:12118] [335439] (2 PDB entries) |
Domain d5nem1_: 5nem 1: [335766] Other proteins in same PDB: d5nema1, d5nema2 automated match to d1qqp1_ complexed with ca, man, nag |
PDB Entry: 5nem (more details), 3.1 Å
SCOPe Domain Sequences for d5nem1_:
Sequence; same for both SEQRES and ATOM records: (download)
>d5nem1_ b.121.4.1 (1:) automated matches {Foot-and-mouth disease virus - type o [TaxId: 12118]} ttsagesadpvtatvenyggetqvqrrqhtdvsfildrfvkvtpkdqinvldlmqtpaht lvgallrtatyyfadlevavkhegnltwvpngapetaldnttnptayhkapltrlalpyt aphrvlatayngnckygeshttnvrgdlqvlaqkvartlptsfnygaikatrvtellyrm kraetycprpllaihpsearhkqkivapvk
Timeline for d5nem1_: