SCOPe 2.06: Domain d5x2od_: 5x2o D:

Lineage for d5x2od_ (5x2o D:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (70 species)
   not a true protein

7. Species Oryzias latipes [TaxId:8090] [334713] (5 PDB entries)

8. Domain d5x2od_: 5x2o D: [334721]
   automated match to d4xara_
   complexed with arg, ca, cl, na, nag

Details for d5x2od_

PDB Entry: 5x2o, 2.6 Å

PDB Description: crystal structure of the medaka fish taste receptor t1r2a-t1r3 ligand binding domains in complex with l-arginine

PDB Compounds: (D:) Taste receptor, type 1, member 3

SCOPe Domain Sequences for d5x2od_:

Sequence, based on SEQRES records:

>d5x2od_ c.93.1.0 (D:) automated matches {Oryzias latipes [TaxId: 8090]}
spnwfnnistdlfsmpgdiklgglfpikeqsnevsndltklnsvscdslnkdglgralvm
kyaveeinansqllpgvklgykiyntcrhsavivrpalsflteksngtlsvecnytdyet
dmvavigpqssemvtvigkllgfflmpqisfgatsdkfsdslvypsffrtvpsdirqvda
mvqlikkfnwnwvavvgseeeygqqgvqqfskkaedmgvcvayqglipiyddpkpaiqti
inniqttevkvvvvfslvspavsffeevikknltgvwiassswaisdkvyslpnidsigt
vigfidetetlellspftevlfkkiheasptekpedpynpcpecwslspanvslvkeesv
qrtafsvyaavytvahalhkllecnsaackwssstrlypwkllevlkefsvnisntslkf
dqngnpnigysviqriwenqslssvgsyrsanlsinetlfkwytnns

Sequence, based on observed residues (ATOM records):

>d5x2od_ c.93.1.0 (D:) automated matches {Oryzias latipes [TaxId: 8090]}
spnwfnnistdlfsmpgdiklgglfpikeqsscdslnkdglgralvmkyaveeinansql
lpgvklgykiyntcrhsavivrpalsflteksngtlsvecnytdyetdmvavigpqssem
vtvigkllgfflmpqisfgatsdkfsdslvypsffrtvpsdirqvdamvqlikkfnwnwv
avvgseeeygqqgvqqfskkaedmgvcvayqglipiykpaiqtiinniqttvvvvfslvs
pavsffeevikknltgvwiassswaisdkvyslpnidsigtvigfidetetlellspfte
vlfkkiheaspynpcpecwslspanvslvkeesvqrtafsvyaavytvahalhkllecns
aackwssstrlypwkllevlkefsvnisntslkfdqngnpnigysviqriwenqslssvg
syrsanlsinetlfkwytnns

Timeline for d5x2od_:

• d5x2od_ is new in SCOPe 2.06-stable
  
• d5x2od_ appears in SCOPe 2.07
  
• d5x2od_ appears in the current release, SCOPe 2.08