Lineage for d5vixa1 (5vix A:1-76)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2501110Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2501111Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2501112Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 2502019Protein automated matches [190118] (17 species)
    not a true protein
  7. 2502228Species Naegleria gruberi [TaxId:5762] [334686] (1 PDB entry)
  8. 2502229Domain d5vixa1: 5vix A:1-76 [334687]
    Other proteins in same PDB: d5vixa3
    automated match to d2k39a_
    complexed with no3

Details for d5vixa1

PDB Entry: 5vix (more details), 1.55 Å

PDB Description: crystal structure of polyubiquitin with 3 ub domains, domains 1 and 2, from naegleria fowleri atcc 30863
PDB Compounds: (A:) Polyubiquitin

SCOPe Domain Sequences for d5vixa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vixa1 d.15.1.1 (A:1-76) automated matches {Naegleria gruberi [TaxId: 5762]}

SCOPe Domain Coordinates for d5vixa1:

Click to download the PDB-style file with coordinates for d5vixa1.
(The format of our PDB-style files is described here.)

Timeline for d5vixa1: