SCOPe 2.08: Domain d5n0ya1: 5n0y A:3-112

Lineage for d5n0ya1 (5n0y A:3-112)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
   sandwich; 7 strands in 2 sheets, greek-key
   variations: some members have additional 1-2 strands

4. Superfamily b.6.1: Cupredoxins [49503] (8 families)
   contains copper-binding site

5. Family b.6.1.6: Peptidylarginine deiminase Pad4, N-terminal domain [110107] (1 protein)
   probably related to cupredoxins but lacking the metal-binding site
   automatically mapped to Pfam PF08526

6. Protein Peptidylarginine deiminase Pad4, N-terminal domain [110108] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [110109] (16 PDB entries)
   Uniprot Q9UM07

8. Domain d5n0ya1: 5n0y A:3-112 [334520]
   Other proteins in same PDB: d5n0ya2, d5n0ya3
   automated match to d1wd8a2
   complexed with 8fq, ca, so4

Details for d5n0ya1

PDB Entry: 5n0y, 2.23 Å

PDB Description: hpad4 crystal complex with afm-30a

PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d5n0ya1:

Sequence, based on SEQRES records:

>d5n0ya1 b.6.1.6 (A:3-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
qgtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahsppakkks
tgsstwpldpgvevtltmkaasgstgdqkvqisyygpktppvkallylta

Sequence, based on observed residues (ATOM records):

>d5n0ya1 b.6.1.6 (A:3-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
qgtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahstwpldpg
vevtltmkaasgstgdqkvqisyygpktppvkallylta

Timeline for d5n0ya1:

• d5n0ya1 first appeared in SCOPe 2.06
  
• d5n0ya1 appears in SCOPe 2.07