SCOPe 2.08: Domain d5uqtb1: 5uqt B:3-539

Lineage for d5uqtb1 (5uqt B:3-539)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (4 proteins)
   contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488

6. Protein automated matches [190532] (4 species)
   not a true protein

7. Species Clostridioides difficile [TaxId:1496] [334302] (5 PDB entries)

8. Domain d5uqtb1: 5uqt B:3-539 [334303]
   Other proteins in same PDB: d5uqta2, d5uqtb2
   automated match to d2bvla1
   complexed with agi, mn

Details for d5uqtb1

PDB Entry: 5uqt, 2.75 Å

PDB Description: clostridium difficile toxin b (tcdb) glucosyltransferase domain co- crystallized with apigenin

PDB Compounds: (B:) toxin b

SCOPe Domain Sequences for d5uqtb1:

Sequence; same for both SEQRES and ATOM records:

>d5uqtb1 c.68.1.22 (B:3-539) automated matches {Clostridioides difficile [TaxId: 1496]}
lvnrkqlekmanvrfrtqedeyvaildaleeyhnmsentvvekylklkdinsltdiyidt
ykksgrnkalkkfkeylvtevlelknnnltpveknlhfvwiggqindtainyinqwkdvn
sdynvnvfydsnaflintlkktvvesaindtlesfrenlndprfdynkffrkrmeiiydk
qknfinyykaqreenpeliiddivktylsneyskeidelntyieeslnkitqnsgndvrn
feefkngesfnlyeqelverwnlaaasdilrisalkeiggmyldvdmlpgiqpdlfesie
kpssvtvdfwemtkleaimkykeyipeytsehfdmldeevqssfesvlasksdkseifss
lgdmeasplevkiafnskgiinqglisvkdsycsnlivkqienrykilnnslnpaisedn
dfntttntfidsimaeanadngrfmmelgkylrvgffpdvkttinlsgpeayaaayqdll
mfkegsmnihlieadlrnfeisktnisqsteqemaslwsfddarakaqfeeykrnyf

Timeline for d5uqtb1:

• d5uqtb1 first appeared in SCOPe 2.06
  
• d5uqtb1 appears in SCOPe 2.07