Lineage for d5jpsa1 (5jps A:176-481)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2473887Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2473888Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2478565Family c.37.1.14: RNA helicase [52724] (4 proteins)
    duplication: consists of two similar domains, one binds NTP and the other binds RNA; also contains an all-alpha subdomain in the C-terminal extension
  6. 2478644Protein automated matches [226986] (8 species)
    not a true protein
  7. 2478685Species Zika virus [TaxId:64320] [317808] (28 PDB entries)
  8. 2478710Domain d5jpsa1: 5jps A:176-481 [334213]
    Other proteins in same PDB: d5jpsa2
    automated match to d2bhra2

Details for d5jpsa1

PDB Entry: 5jps (more details), 1.78 Å

PDB Description: structure of the zika virus ns3 helicase domain
PDB Compounds: (A:) NS3 helicase

SCOPe Domain Sequences for d5jpsa1:

Sequence, based on SEQRES records: (download)

>d5jpsa1 c.37.1.14 (A:176-481) automated matches {Zika virus [TaxId: 64320]}
vecfepsmlkkkqltvldlhpgagktrrvlpeivreaikkrlrtvilaptrvvaaemeea
lrglpvrymttavnvthsgteivdlmchatftsrllqpirvpnynlnimdeahftdpssi
aargyistrvemgeaaaifmtatppgtrdafpdsnspimdtevevperawssgfdwvtdh
sgktvwfvpsvrngneiaacltkagkrviqlsrktfetefqktknqewdfvittdisemg
anfkadrvidsrrclkpvildgervilagpmpvthasaaqrrgrigrnpnkpgdeymygg
gcaetd

Sequence, based on observed residues (ATOM records): (download)

>d5jpsa1 c.37.1.14 (A:176-481) automated matches {Zika virus [TaxId: 64320]}
vecfepsmlkkkqltvldlktrrvlpeivreaikkrlrtvilaptrvvaaemeealrglp
vrymtsgteivdlmchatftsrllqpirvpnynlnimdeahftdpssiaargyistrvem
geaaaifmtatppgtrdafpdsnspimdtevevperawssgfdwvtdhsgktvwfvpsvr
ngneiaacltkagkrviqlsrktfetefqktknqewdfvittdisemganfkadrvidsr
rclkpvildgervilagpmpvthasaaqrrgrigrnpnkpgdeymygggcaetd

SCOPe Domain Coordinates for d5jpsa1:

Click to download the PDB-style file with coordinates for d5jpsa1.
(The format of our PDB-style files is described here.)

Timeline for d5jpsa1:

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Domains from same chain:
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d5jpsa2