SCOPe 2.08: Domain d5jpsa1: 5jps A:176-481

Lineage for d5jpsa1 (5jps A:176-481)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.14: RNA helicase [52724] (7 proteins)
   duplication: consists of two similar domains, one binds NTP and the other binds RNA; also contains an all-alpha subdomain in the C-terminal extension

6. Protein automated matches [226986] (8 species)
   not a true protein

7. Species Zika virus [TaxId:64320] [317808] (28 PDB entries)

8. Domain d5jpsa1: 5jps A:176-481 [334213]
   Other proteins in same PDB: d5jpsa2
   automated match to d2bhra2

Details for d5jpsa1

PDB Entry: 5jps, 1.78 Å

PDB Description: structure of the zika virus ns3 helicase domain

PDB Compounds: (A:) NS3 helicase

SCOPe Domain Sequences for d5jpsa1:

Sequence, based on SEQRES records:

>d5jpsa1 c.37.1.14 (A:176-481) automated matches {Zika virus [TaxId: 64320]}
vecfepsmlkkkqltvldlhpgagktrrvlpeivreaikkrlrtvilaptrvvaaemeea
lrglpvrymttavnvthsgteivdlmchatftsrllqpirvpnynlnimdeahftdpssi
aargyistrvemgeaaaifmtatppgtrdafpdsnspimdtevevperawssgfdwvtdh
sgktvwfvpsvrngneiaacltkagkrviqlsrktfetefqktknqewdfvittdisemg
anfkadrvidsrrclkpvildgervilagpmpvthasaaqrrgrigrnpnkpgdeymygg
gcaetd

Sequence, based on observed residues (ATOM records):

>d5jpsa1 c.37.1.14 (A:176-481) automated matches {Zika virus [TaxId: 64320]}
vecfepsmlkkkqltvldlktrrvlpeivreaikkrlrtvilaptrvvaaemeealrglp
vrymtsgteivdlmchatftsrllqpirvpnynlnimdeahftdpssiaargyistrvem
geaaaifmtatppgtrdafpdsnspimdtevevperawssgfdwvtdhsgktvwfvpsvr
ngneiaacltkagkrviqlsrktfetefqktknqewdfvittdisemganfkadrvidsr
rclkpvildgervilagpmpvthasaaqrrgrigrnpnkpgdeymygggcaetd

Timeline for d5jpsa1:

• d5jpsa1 first appeared in SCOPe 2.06
  
• d5jpsa1 appears in SCOPe 2.07