Lineage for d5twkc1 (5twk C:2-155)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2492420Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2492421Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2492455Family c.116.1.3: YbeA-like [82371] (5 protein domains)
    Pfam PF02590
  6. 2492481Protein automated matches [195222] (2 species)
    not a true protein
  7. 2492482Species Escherichia coli [TaxId:562] [333863] (2 PDB entries)
  8. 2492485Domain d5twkc1: 5twk C:2-155 [333887]
    Other proteins in same PDB: d5twka2, d5twkb2, d5twkc2, d5twkd2
    automated match to d1ns5b_
    protein/RNA complex; complexed with sfg

Details for d5twkc1

PDB Entry: 5twk (more details), 2.1 Å

PDB Description: crystal structure of rlmh in complex with sinefungin
PDB Compounds: (C:) Ribosomal RNA large subunit methyltransferase H

SCOPe Domain Sequences for d5twkc1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5twkc1 c.116.1.3 (C:2-155) automated matches {Escherichia coli [TaxId: 562]}
klqlvavgtkmpdwvqtgfteylrrfpkdmpfelieipagkrgknadikrildkegeqml
aaagknrivtldipgkpwdtpqlaaelerwkldgrdvslliggpeglspackaaaeqsws
lsaltlphplvrvlvaeslyrawsittnhpyhre

SCOPe Domain Coordinates for d5twkc1:

Click to download the PDB-style file with coordinates for d5twkc1.
(The format of our PDB-style files is described here.)

Timeline for d5twkc1: