SCOPe 2.06: Domain d1gdtb2: 1gdt B:1-140

Lineage for d1gdtb2 (1gdt B:1-140)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.53: Resolvase-like [53040] (2 superfamilies)
   Core: 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 21345; strand 5 is antiparallel to the rest

4. Superfamily c.53.1: Resolvase-like [53041] (2 families)
   automatically mapped to Pfam PF00239

5. Family c.53.1.1: gamma,delta resolvase, catalytic domain [53042] (1 protein)

6. Protein gamma,delta resolvase, catalytic domain [53043] (1 species)

7. Species Escherichia coli [TaxId:562] [53044] (9 PDB entries)

8. Domain d1gdtb2: 1gdt B:1-140 [33349]
   Other proteins in same PDB: d1gdta1, d1gdtb1
   protein/DNA complex

Details for d1gdtb2

PDB Entry: 1gdt, 3 Å

PDB Description: crystal structure of a site-specific recombinase, gamma-delta resolvase complexed with a 34 bp cleavage site

PDB Compounds: (B:) protein (gamma delta resolvase)

SCOPe Domain Sequences for d1gdtb2:

Sequence; same for both SEQRES and ATOM records:

>d1gdtb2 c.53.1.1 (B:1-140) gamma,delta resolvase, catalytic domain {Escherichia coli [TaxId: 562]}
mrlfgyarvstsqqsldiqvralkdagvkanriftdkasgsssdrkgldllrmkveegdv
ilvkkldrlgrdtadmiqlikefdaqgvsirfiddgistdgemgkmvvtilsavaqaerq
rilertnegrqeamakgvvf

Timeline for d1gdtb2:

• d1gdtb2 first appeared (with stable ids) in SCOP 1.55
  
• d1gdtb2 appears in SCOPe 2.05
  
• d1gdtb2 appears in SCOPe 2.07
  
• d1gdtb2 appears in the current release, SCOPe 2.08