SCOPe 2.07: Domain d5iyyb1: 5iyy B:273-427

Lineage for d5iyyb1 (5iyy B:273-427)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.18: Galactose-binding domain-like [49784] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll

4. Superfamily b.18.1: Galactose-binding domain-like [49785] (35 families)

5. Family b.18.1.2: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) [49791] (4 proteins)
   automatically mapped to Pfam PF00754

6. Protein B1 domain of neuropilin-1 [82016] (2 species)

7. Species Human (Homo sapiens) [TaxId:9606] [82017] (9 PDB entries)

8. Domain d5iyyb1: 5iyy B:273-427 [332540]
   Other proteins in same PDB: d5iyya2, d5iyyb2
   automated match to d1kexa_
   complexed with r40

Details for d5iyyb1

PDB Entry: 5iyy, 1.6 Å

PDB Description: x-ray structure of neuropilin-1 b1 domain complexed with arg-4 ligand.

PDB Compounds: (B:) Neuropilin-1

SCOPe Domain Sequences for d5iyyb1:

Sequence; same for both SEQRES and ATOM records:

>d5iyyb1 b.18.1.2 (B:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]}
fkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlgl
lrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvvv
avfpkplitrfvrikpatwetgismrfevygckit

Timeline for d5iyyb1:

• d5iyyb1 first appeared in SCOPe 2.06
  
• d5iyyb1 appears in the current release, SCOPe 2.08