Lineage for Species: Scheffersomyces stipitis [TaxId: 322104]

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2864564Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2864565Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2865204Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 2865205Protein automated matches [227126] (21 species)
    not a true protein
  7. 2865566Species Scheffersomyces stipitis [TaxId:322104] [328848] (25 PDB entries)

PDB entries in Species: Scheffersomyces stipitis [TaxId: 322104]:

  1. Domain(s) for 5hgx:
    1. 2865595Domain d5hgxa1: 5hgx A:2-334 [328877]
      Other proteins in same PDB: d5hgxa3
      automated match to d1ay0a1
      complexed with 1pe; mutant
    2. 2865596Domain d5hgxa2: 5hgx A:335-531 [328878]
      Other proteins in same PDB: d5hgxa3
      automated match to d1gpua2
      complexed with 1pe; mutant
  2. Domain(s) for 5hje:
    1. 2865609Domain d5hjea1: 5hje A:2-334 [328849]
      Other proteins in same PDB: d5hjea3
      automated match to d1ay0a1
      complexed with ca, i22, tpp
    2. 2865610Domain d5hjea2: 5hje A:335-531 [328850]
      Other proteins in same PDB: d5hjea3
      automated match to d1gpua2
      complexed with ca, i22, tpp
  3. Domain(s) for 5hyv:
    1. 2865583Domain d5hyva1: 5hyv A:2-334 [329550]
      Other proteins in same PDB: d5hyva3
      automated match to d1ay0a1
      complexed with 1pe, ca, tpp
    2. 2865584Domain d5hyva2: 5hyv A:335-531 [329551]
      Other proteins in same PDB: d5hyva3
      automated match to d1gpua2
      complexed with 1pe, ca, tpp
  4. Domain(s) for 5i4i:
    1. 2865589Domain d5i4ia1: 5i4i A:2-334 [329925]
      Other proteins in same PDB: d5i4ia3
      automated match to d1ay0a1
    2. 2865590Domain d5i4ia2: 5i4i A:335-531 [329926]
      Other proteins in same PDB: d5i4ia3
      automated match to d1gpua2
  5. Domain(s) for 5i51:
    1. 2865611Domain d5i51a1: 5i51 A:2-334 [329751]
      Other proteins in same PDB: d5i51a3
      automated match to d1ay0a1
      complexed with ca, f6r, peg, tpp; mutant
    2. 2865612Domain d5i51a2: 5i51 A:335-531 [329752]
      Other proteins in same PDB: d5i51a3
      automated match to d1gpua2
      complexed with ca, f6r, peg, tpp; mutant
  6. Domain(s) for 5i5e:
    1. 2865613Domain d5i5ea1: 5i5e A:2-334 [329958]
      Other proteins in same PDB: d5i5ea3
      automated match to d1ay0a1
      complexed with 5sp, ca, tpp; mutant
    2. 2865614Domain d5i5ea2: 5i5e A:335-531 [329959]
      Other proteins in same PDB: d5i5ea3
      automated match to d1gpua2
      complexed with 5sp, ca, tpp; mutant
  7. Domain(s) for 5i5g:
    1. 2865615Domain d5i5ga1: 5i5g A:2-334 [329773]
      Other proteins in same PDB: d5i5ga3
      automated match to d1ay0a1
      complexed with peg, pop; mutant
    2. 2865616Domain d5i5ga2: 5i5g A:335-531 [329774]
      Other proteins in same PDB: d5i5ga3
      automated match to d1gpua2
      complexed with peg, pop; mutant
  8. Domain(s) for 5xps:
    1. 2865593Domain d5xpsa1: 5xps A:3-334 [353352]
      Other proteins in same PDB: d5xpsa3
      automated match to d1ay0a1
      complexed with ca, e4p, peg, tpp
    2. 2865594Domain d5xpsa2: 5xps A:335-531 [353353]
      Other proteins in same PDB: d5xpsa3
      automated match to d1gpua2
      complexed with ca, e4p, peg, tpp
  9. Domain(s) for 5xqa:
    1. 2865585Domain d5xqaa1: 5xqa A:3-334 [353309]
      Other proteins in same PDB: d5xqaa3
      automated match to d1ay0a1
      complexed with ca, hsx, tpp
    2. 2865586Domain d5xqaa2: 5xqa A:335-531 [353310]
      Other proteins in same PDB: d5xqaa3
      automated match to d1gpua2
      complexed with ca, hsx, tpp
  10. Domain(s) for 5xqk:
    1. 2865599Domain d5xqka1: 5xqk A:3-334 [353595]
      Other proteins in same PDB: d5xqka3
      automated match to d1ay0a1
      complexed with ca, peg, t5x
    2. 2865600Domain d5xqka2: 5xqk A:335-531 [353596]
      Other proteins in same PDB: d5xqka3
      automated match to d1gpua2
      complexed with ca, peg, t5x
  11. Domain(s) for 5xrv:
    1. 2865607Domain d5xrva1: 5xrv A:3-334 [353598]
      Other proteins in same PDB: d5xrva3
      automated match to d1ay0a1
      complexed with 8ef, ca, f6r, peg, tpp
    2. 2865608Domain d5xrva2: 5xrv A:335-531 [353599]
      Other proteins in same PDB: d5xrva3
      automated match to d1gpua2
      complexed with 8ef, ca, f6r, peg, tpp
  12. Domain(s) for 5xry:
    1. 2865605Domain d5xrya1: 5xry A:3-334 [351528]
      Other proteins in same PDB: d5xrya3
      automated match to d1ay0a1
      complexed with ca, peg
    2. 2865606Domain d5xrya2: 5xry A:335-531 [351529]
      Other proteins in same PDB: d5xrya3
      automated match to d1gpua2
      complexed with ca, peg
  13. Domain(s) for 5xs6:
    1. 2865579Domain d5xs6a1: 5xs6 A:3-334 [351571]
      Other proteins in same PDB: d5xs6a3
      automated match to d1ay0a1
      complexed with ca, peg, tpp
    2. 2865580Domain d5xs6a2: 5xs6 A:335-531 [351572]
      Other proteins in same PDB: d5xs6a3
      automated match to d1gpua2
      complexed with ca, peg, tpp
  14. Domain(s) for 5xsa:
    1. 2865581Domain d5xsaa1: 5xsa A:3-334 [351524]
      Other proteins in same PDB: d5xsaa3
      automated match to d1ay0a1
      complexed with 8el, ca
    2. 2865582Domain d5xsaa2: 5xsa A:335-531 [351525]
      Other proteins in same PDB: d5xsaa3
      automated match to d1gpua2
      complexed with 8el, ca
  15. Domain(s) for 5xsb:
    1. 2865571Domain d5xsba1: 5xsb A:3-334 [351554]
      Other proteins in same PDB: d5xsba3
      automated match to d1ay0a1
      complexed with 8el, ca
    2. 2865572Domain d5xsba2: 5xsb A:335-531 [351555]
      Other proteins in same PDB: d5xsba3
      automated match to d1gpua2
      complexed with 8el, ca
  16. Domain(s) for 5xsm:
    1. 2865577Domain d5xsma1: 5xsm A:3-334 [351531]
      Other proteins in same PDB: d5xsma3
      automated match to d1ay0a1
      complexed with 8eo, ca, peg
    2. 2865578Domain d5xsma2: 5xsm A:335-531 [351532]
      Other proteins in same PDB: d5xsma3
      automated match to d1gpua2
      complexed with 8eo, ca, peg
  17. Domain(s) for 5xt0:
    1. 2865601Domain d5xt0a1: 5xt0 A:3-334 [353823]
      Other proteins in same PDB: d5xt0a3
      automated match to d1ay0a1
      complexed with ca, peg, t6f
    2. 2865602Domain d5xt0a2: 5xt0 A:335-531 [353824]
      Other proteins in same PDB: d5xt0a3
      automated match to d1gpua2
      complexed with ca, peg, t6f
  18. Domain(s) for 5xt4:
    1. 2865591Domain d5xt4a1: 5xt4 A:3-334 [353809]
      Other proteins in same PDB: d5xt4a3
      automated match to d1ay0a1
      complexed with ca, peg, t6f
    2. 2865592Domain d5xt4a2: 5xt4 A:335-531 [353810]
      Other proteins in same PDB: d5xt4a3
      automated match to d1gpua2
      complexed with ca, peg, t6f
  19. Domain(s) for 5xtl:
    1. 2865597Domain d5xtla1: 5xtl A:3-334 [351600]
      Other proteins in same PDB: d5xtla3
      automated match to d1ay0a1
      complexed with 8gf, ca, p23, peg
    2. 2865598Domain d5xtla2: 5xtl A:335-531 [351601]
      Other proteins in same PDB: d5xtla3
      automated match to d1gpua2
      complexed with 8gf, ca, p23, peg
  20. Domain(s) for 5xtv:
    1. 2865573Domain d5xtva1: 5xtv A:3-334 [351605]
      Other proteins in same PDB: d5xtva3
      automated match to d1ay0a1
      complexed with 8ef, ca, peg
    2. 2865574Domain d5xtva2: 5xtv A:335-531 [351606]
      Other proteins in same PDB: d5xtva3
      automated match to d1gpua2
      complexed with 8ef, ca, peg
  21. Domain(s) for 5xtx:
    1. 2865587Domain d5xtxa1: 5xtx A:3-334 [354031]
      Other proteins in same PDB: d5xtxa3
      automated match to d1ay0a1
      complexed with 8ml, ca, peg
    2. 2865588Domain d5xtxa2: 5xtx A:335-531 [354032]
      Other proteins in same PDB: d5xtxa3
      automated match to d1gpua2
      complexed with 8ml, ca, peg
  22. Domain(s) for 5xu2:
    1. 2865575Domain d5xu2a1: 5xu2 A:3-334 [354170]
      Other proteins in same PDB: d5xu2a3
      automated match to d1ay0a1
      complexed with 8el, ca, f6r, ocs, peg, tpp
    2. 2865576Domain d5xu2a2: 5xu2 A:335-531 [354171]
      Other proteins in same PDB: d5xu2a3
      automated match to d1gpua2
      complexed with 8el, ca, f6r, ocs, peg, tpp
  23. Domain(s) for 5xu9:
    1. 2865603Domain d5xu9a1: 5xu9 A:3-334 [354115]
      Other proteins in same PDB: d5xu9a3
      automated match to d1ay0a1
      complexed with 8n9, ca, e4p, peg
    2. 2865604Domain d5xu9a2: 5xu9 A:335-531 [354116]
      Other proteins in same PDB: d5xu9a3
      automated match to d1gpua2
      complexed with 8n9, ca, e4p, peg
  24. Domain(s) for 5xuf:
    1. 2865569Domain d5xufa1: 5xuf A:2-334 [415569]
      Other proteins in same PDB: d5xufa3
      automated match to d1ay0a1
      complexed with 8fl, ca, peg
    2. 2865570Domain d5xufa2: 5xuf A:335-531 [415570]
      Other proteins in same PDB: d5xufa3
      automated match to d1gpua2
      complexed with 8fl, ca, peg
  25. Domain(s) for 5xvt:
    1. 2865567Domain d5xvta1: 5xvt A:3-334 [415572]
      Other proteins in same PDB: d5xvta3
      automated match to d1ay0a1
      complexed with 8fl, ca, peg
    2. 2865568Domain d5xvta2: 5xvt A:335-531 [415573]
      Other proteins in same PDB: d5xvta3
      automated match to d1gpua2
      complexed with 8fl, ca, peg

More info for Species Scheffersomyces stipitis [TaxId:322104] from c.36.1.0 automated matches

Timeline for Species Scheffersomyces stipitis [TaxId:322104] from c.36.1.0 automated matches: